Strain Fitness in Pseudomonas putida KT2440 around PP_4774

Experiment: BC Lignin Sorghum 20 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 20 vol% (C)
5,434,840	+		PP_4772	0.83	-0.3
5,435,105	+				+0.8
5,435,105	+				-0.1
5,435,256	+				-0.2
5,435,289	+				+0.1
5,435,290	-				+0.4
5,435,290	-				-0.2
5,435,313	+				+1.4
5,435,313	+				+0.2
5,435,314	-				+0.7
5,435,314	-				+1.6
5,435,324	+				-0.6
5,435,324	+				+0.8
5,435,324	+				-0.9
5,435,377	+		PP_4773	0.12	+0.1
5,435,377	+		PP_4773	0.12	+1.0
5,435,378	-		PP_4773	0.13	+1.4
5,435,378	-		PP_4773	0.13	+1.1
5,435,462	-		PP_4773	0.30	+0.6
5,435,539	+		PP_4773	0.46	-0.0
5,435,539	+		PP_4773	0.46	-0.4
5,435,540	-		PP_4773	0.46	-0.9
5,435,540	-		PP_4773	0.46	+0.8
5,435,540	-		PP_4773	0.46	+0.9
5,435,593	+		PP_4773	0.57	-0.4
5,435,594	-		PP_4773	0.57	-0.1
5,435,596	+		PP_4773	0.58	-0.1
5,435,830	+				+0.3
5,435,830	+				+1.3
5,435,831	-				-0.2
5,436,014	+		PP_4774	0.22	+0.2
5,436,015	-		PP_4774	0.22	-0.9
5,436,146	+		PP_4774	0.37	-0.2
5,436,147	-		PP_4774	0.37	+0.2
5,436,147	-		PP_4774	0.37	+0.3
5,436,169	+		PP_4774	0.40	+0.5
5,436,169	+		PP_4774	0.40	+0.5
5,436,170	-		PP_4774	0.40	-0.4
5,436,170	-		PP_4774	0.40	-0.1
5,436,170	-		PP_4774	0.40	-0.0
5,436,236	+		PP_4774	0.47	+0.3
5,436,236	+		PP_4774	0.47	+0.6
5,436,236	+		PP_4774	0.47	+0.2
5,436,236	+		PP_4774	0.47	+0.9
5,436,237	-		PP_4774	0.48	-1.1
5,436,237	-		PP_4774	0.48	+0.2
5,436,290	+		PP_4774	0.54	+0.6
5,436,395	+		PP_4774	0.66	+0.5
5,436,396	-		PP_4774	0.66	-0.8
5,436,433	+		PP_4774	0.70	+0.4
5,436,613	+				-0.2
5,436,614	-				+0.3
5,436,614	-				-0.2
5,436,614	-				+0.2
5,436,614	-				-0.1
5,436,697	+				+0.7
5,436,698	-				+0.1
5,436,698	-				-0.1
5,436,701	+				-1.0
5,436,701	+				-0.3
5,436,701	+				+0.9
5,436,702	-				-0.7
5,436,702	-				+0.3
5,436,702	-				-1.1
5,436,735	+				+0.0
5,436,736	-				+0.0
5,436,736	-				-0.0
5,436,774	+				+0.2
5,436,804	+				-0.6
5,436,805	-				+0.6
5,436,805	-				-0.3
5,436,805	-				-1.3
5,436,898	-		PP_4775	0.21	-0.7
5,436,898	-		PP_4775	0.21	+0.4
5,436,898	-		PP_4775	0.21	+0.3
5,436,898	-		PP_4775	0.21	-0.0
5,436,922	-		PP_4775	0.24	+0.1
5,436,987	+		PP_4775	0.32	+1.2
5,436,987	+		PP_4775	0.32	+0.6
5,436,988	-		PP_4775	0.32	+0.1
5,436,988	-		PP_4775	0.32	-0.5
5,436,988	-		PP_4775	0.32	+0.6
5,436,988	-		PP_4775	0.32	+0.0
5,436,988	-		PP_4775	0.32	-0.9
5,437,009	-		PP_4775	0.34	-0.2
5,437,014	+		PP_4775	0.35	+0.7
5,437,017	+		PP_4775	0.35	+0.6
5,437,017	+		PP_4775	0.35	-0.0
5,437,017	+		PP_4775	0.35	-0.1
5,437,017	+		PP_4775	0.35	-0.3
5,437,018	-		PP_4775	0.35	-1.4
5,437,018	-		PP_4775	0.35	+1.4
5,437,018	-		PP_4775	0.35	-0.8
5,437,072	-		PP_4775	0.42	-0.0
5,437,083	+		PP_4775	0.43	+0.5
5,437,083	+		PP_4775	0.43	-0.7
5,437,083	+		PP_4775	0.43	+0.1
5,437,101	+		PP_4775	0.45	-0.5
5,437,122	+		PP_4775	0.48	-0.9
5,437,122	+		PP_4775	0.48	+0.1
5,437,122	+		PP_4775	0.48	-0.8
5,437,123	-		PP_4775	0.48	+0.2
5,437,167	+		PP_4775	0.53	-0.2
5,437,167	+		PP_4775	0.53	+0.0
5,437,167	+		PP_4775	0.53	+0.4
5,437,168	-		PP_4775	0.53	-0.6
5,437,168	-		PP_4775	0.53	+0.8
5,437,168	-		PP_4775	0.53	+0.6
5,437,187	+		PP_4775	0.56	-0.1
5,437,188	-		PP_4775	0.56	+0.1
5,437,188	-		PP_4775	0.56	+0.5
5,437,365	+		PP_4775	0.77	-0.2
5,437,365	+		PP_4775	0.77	-0.3
5,437,366	-		PP_4775	0.77	+0.3
5,437,366	-		PP_4775	0.77	+0.1
5,437,368	+		PP_4775	0.77	+0.1
5,437,369	-		PP_4775	0.77	-0.7
5,437,369	-		PP_4775	0.77	+0.1
5,437,369	-		PP_4775	0.77	-0.1
5,437,600	+				-2.0
5,437,600	+				+0.6
5,437,601	-				-0.8
5,437,601	-				+0.0
5,437,601	-				+0.5
5,437,601	-				-0.1
5,437,625	+				-0.3