Experiment: BC Lignin Sorghum 20 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4545 and PP_4546 are separated by 123 nucleotides PP_4546 and PP_4547 are separated by 503 nucleotides
PP_4545: PP_4545 - beta-ketodecanoyl-(Acyl-carrier-protein) synthase, at 5,162,678 to 5,163,850
_4545
PP_4546: PP_4546 - ATP-dependent helicase HrpA, at 5,163,974 to 5,167,879
_4546
PP_4547: PP_4547 - putative Glutamine synthetase, at 5,168,383 to 5,169,747
_4547
Position (kb) 5163
5164
5165
5166
5167
5168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5163.020 kb on + strand, within PP_4545 at 5163.020 kb on + strand, within PP_4545 at 5163.021 kb on - strand, within PP_4545 at 5163.021 kb on - strand, within PP_4545 at 5163.021 kb on - strand, within PP_4545 at 5163.291 kb on - strand, within PP_4545 at 5163.295 kb on + strand, within PP_4545 at 5163.296 kb on - strand, within PP_4545 at 5163.766 kb on - strand at 5163.766 kb on - strand at 5163.766 kb on - strand at 5163.766 kb on - strand at 5163.766 kb on - strand at 5163.794 kb on - strand at 5163.859 kb on - strand at 5163.870 kb on - strand at 5163.888 kb on + strand at 5163.888 kb on + strand at 5163.888 kb on + strand at 5163.888 kb on + strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.965 kb on + strand at 5163.965 kb on + strand at 5163.966 kb on - strand at 5163.966 kb on - strand at 5164.147 kb on - strand at 5164.196 kb on + strand at 5164.297 kb on - strand at 5164.297 kb on - strand at 5164.310 kb on + strand at 5164.565 kb on + strand, within PP_4546 at 5165.295 kb on + strand, within PP_4546 at 5165.296 kb on - strand, within PP_4546 at 5165.329 kb on + strand, within PP_4546 at 5165.330 kb on - strand, within PP_4546 at 5165.330 kb on - strand, within PP_4546 at 5165.341 kb on - strand, within PP_4546 at 5165.341 kb on - strand, within PP_4546 at 5165.440 kb on + strand, within PP_4546 at 5165.440 kb on + strand, within PP_4546 at 5165.488 kb on - strand, within PP_4546 at 5165.496 kb on + strand, within PP_4546 at 5165.496 kb on + strand, within PP_4546 at 5165.728 kb on - strand, within PP_4546 at 5166.739 kb on - strand, within PP_4546 at 5166.745 kb on - strand, within PP_4546 at 5166.780 kb on + strand, within PP_4546 at 5166.862 kb on + strand, within PP_4546 at 5166.862 kb on + strand, within PP_4546 at 5166.862 kb on + strand, within PP_4546 at 5167.123 kb on - strand, within PP_4546 at 5167.329 kb on + strand, within PP_4546 at 5167.399 kb on + strand, within PP_4546 at 5167.400 kb on - strand, within PP_4546 at 5167.400 kb on - strand, within PP_4546 at 5167.492 kb on + strand at 5167.617 kb on - strand at 5167.617 kb on - strand at 5167.688 kb on + strand at 5167.689 kb on - strand at 5167.890 kb on - strand at 5168.009 kb on - strand at 5168.076 kb on + strand at 5168.109 kb on - strand at 5168.367 kb on + strand at 5168.368 kb on - strand at 5168.399 kb on + strand at 5168.400 kb on - strand at 5168.522 kb on - strand, within PP_4547 at 5168.522 kb on - strand, within PP_4547 at 5168.633 kb on - strand, within PP_4547 at 5168.788 kb on + strand, within PP_4547 at 5168.788 kb on + strand, within PP_4547 at 5168.788 kb on + strand, within PP_4547 at 5168.789 kb on - strand, within PP_4547 at 5168.821 kb on + strand, within PP_4547 at 5168.822 kb on - strand, within PP_4547 at 5168.822 kb on - strand, within PP_4547 at 5168.822 kb on - strand, within PP_4547
Per-strain Table
Position Strand Gene LocusTag Fraction BC Lignin Sorghum 20 vol% (C) remove 5,163,020 + PP_4545 0.29 -1.4 5,163,020 + PP_4545 0.29 +0.0 5,163,021 - PP_4545 0.29 -0.5 5,163,021 - PP_4545 0.29 +0.1 5,163,021 - PP_4545 0.29 -0.8 5,163,291 - PP_4545 0.52 +1.0 5,163,295 + PP_4545 0.53 +0.6 5,163,296 - PP_4545 0.53 -0.5 5,163,766 - +0.2 5,163,766 - -0.6 5,163,766 - +0.1 5,163,766 - +0.6 5,163,766 - +0.0 5,163,794 - +0.9 5,163,859 - +0.1 5,163,870 - +0.1 5,163,888 + +0.6 5,163,888 + -0.4 5,163,888 + +0.6 5,163,888 + -0.1 5,163,889 - -0.4 5,163,889 - -0.8 5,163,889 - +1.1 5,163,889 - +0.9 5,163,889 - +0.2 5,163,889 - -1.1 5,163,889 - +0.5 5,163,889 - -0.2 5,163,965 + +1.3 5,163,965 + -0.7 5,163,966 - -0.5 5,163,966 - +1.1 5,164,147 - +0.3 5,164,196 + -1.2 5,164,297 - -2.6 5,164,297 - -0.2 5,164,310 + -0.4 5,164,565 + PP_4546 0.15 -0.4 5,165,295 + PP_4546 0.34 -2.3 5,165,296 - PP_4546 0.34 -1.1 5,165,329 + PP_4546 0.35 -1.4 5,165,330 - PP_4546 0.35 -0.4 5,165,330 - PP_4546 0.35 -2.0 5,165,341 - PP_4546 0.35 -1.4 5,165,341 - PP_4546 0.35 +0.0 5,165,440 + PP_4546 0.38 -0.4 5,165,440 + PP_4546 0.38 -0.4 5,165,488 - PP_4546 0.39 +1.6 5,165,496 + PP_4546 0.39 -1.0 5,165,496 + PP_4546 0.39 -1.4 5,165,728 - PP_4546 0.45 -1.7 5,166,739 - PP_4546 0.71 +0.0 5,166,745 - PP_4546 0.71 -0.8 5,166,780 + PP_4546 0.72 +0.0 5,166,862 + PP_4546 0.74 +0.0 5,166,862 + PP_4546 0.74 +0.0 5,166,862 + PP_4546 0.74 -1.6 5,167,123 - PP_4546 0.81 -1.0 5,167,329 + PP_4546 0.86 -3.0 5,167,399 + PP_4546 0.88 +1.6 5,167,400 - PP_4546 0.88 +0.2 5,167,400 - PP_4546 0.88 -1.0 5,167,492 + -0.7 5,167,617 - +0.3 5,167,617 - +2.0 5,167,688 + +3.2 5,167,689 - -2.1 5,167,890 - +0.7 5,168,009 - -1.0 5,168,076 + -0.1 5,168,109 - +0.9 5,168,367 + +0.0 5,168,368 - +0.2 5,168,399 + -0.5 5,168,400 - +1.2 5,168,522 - PP_4547 0.10 -1.8 5,168,522 - PP_4547 0.10 -0.2 5,168,633 - PP_4547 0.18 +0.6 5,168,788 + PP_4547 0.30 +1.0 5,168,788 + PP_4547 0.30 -0.5 5,168,788 + PP_4547 0.30 +0.4 5,168,789 - PP_4547 0.30 +0.7 5,168,821 + PP_4547 0.32 -0.4 5,168,822 - PP_4547 0.32 +1.2 5,168,822 - PP_4547 0.32 -0.2 5,168,822 - PP_4547 0.32 -0.9
Or see this region's nucleotide sequence