Strain Fitness in Pseudomonas putida KT2440 around PP_3461

Experiment: BC Lignin Sorghum 20 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 20 vol% (C)
3,922,449	+		PP_3459	0.48	-0.5
3,922,450	-				+0.4
3,922,450	-		PP_3459	0.48	-0.1
3,922,450	-		PP_3459	0.48	-0.5
3,922,450	-		PP_3459	0.48	-1.0
3,922,450	-		PP_3459	0.48	-0.0
3,922,471	-		PP_3459	0.50	-0.9
3,922,471	-		PP_3459	0.50	+1.1
3,922,471	-		PP_3459	0.50	-0.4
3,922,503	+		PP_3459	0.52	+0.2
3,922,504	-		PP_3459	0.53	+0.5
3,922,596	+		PP_3459	0.61	-0.2
3,922,596	+		PP_3459	0.61	-0.6
3,922,635	+		PP_3459	0.64	+0.8
3,922,635	+		PP_3459	0.64	+0.0
3,922,635	+		PP_3459	0.64	-0.2
3,922,635	+		PP_3459	0.64	-0.1
3,922,636	-		PP_3459	0.64	-0.3
3,922,636	-		PP_3459	0.64	-0.6
3,922,636	-		PP_3459	0.64	+1.1
3,922,671	+		PP_3459	0.67	+0.9
3,922,671	+		PP_3459	0.67	-0.3
3,922,672	-		PP_3459	0.67	-0.2
3,922,672	-		PP_3459	0.67	-0.5
3,922,782	+		PP_3459	0.77	+0.4
3,922,783	-		PP_3459	0.77	-0.0
3,922,854	+		PP_3459	0.83	-2.1
3,922,855	-		PP_3459	0.83	-1.1
3,922,899	+		PP_3459	0.87	+0.4
3,922,917	+		PP_3459	0.89	+1.9
3,922,918	-		PP_3459	0.89	+0.2
3,923,137	+		PP_3460	0.24	+0.7
3,923,138	-		PP_3460	0.25	+0.3
3,923,194	+		PP_3460	0.42	+1.1
3,923,194	+		PP_3460	0.42	-0.2
3,923,408	+				-0.3
3,923,409	-				-1.9
3,923,450	+				-0.8
3,923,450	+				+0.3
3,923,450	+				+0.7
3,923,451	-				+0.1
3,923,495	+				+0.4
3,923,534	+		PP_3461	0.11	-1.2
3,923,535	-		PP_3461	0.11	-0.1
3,923,546	+		PP_3461	0.11	-0.3
3,923,547	-		PP_3461	0.11	+0.6
3,923,852	+		PP_3461	0.33	-0.5
3,923,937	+		PP_3461	0.39	-0.6
3,924,057	-		PP_3461	0.47	-1.6
3,924,099	-		PP_3461	0.50	-0.3
3,924,223	-		PP_3461	0.59	-0.4
3,924,350	+		PP_3461	0.68	+0.5
3,924,412	-		PP_3461	0.72	-0.7
3,924,461	+		PP_3461	0.75	-0.2
3,924,461	+		PP_3461	0.75	+0.8
3,924,461	+		PP_3461	0.75	+0.2
3,924,461	+		PP_3461	0.75	-0.0
3,924,462	-		PP_3461	0.75	-0.6
3,924,462	-		PP_3461	0.75	-1.2
3,924,462	-		PP_3461	0.75	+0.8
3,924,770	-				+0.7
3,924,770	-				+0.4
3,924,802	+				+0.1
3,924,803	-				-1.1
3,924,805	+				+0.4
3,924,805	+				-1.1
3,924,806	-				+0.8
3,924,806	-				-0.3
3,925,115	+		PP_5602	0.16	+1.2
3,925,116	-		PP_5602	0.16	-0.1
3,925,481	-		PP_5602	0.38	+0.6
3,925,510	+		PP_5602	0.40	-0.2
3,925,558	-		PP_5602	0.43	-0.5
3,925,558	-		PP_5602	0.43	+0.7
3,925,558	-		PP_5602	0.43	+0.2
3,925,640	+		PP_5602	0.48	-0.1
3,925,640	+		PP_5602	0.48	+0.4
3,925,641	-		PP_5602	0.48	-0.7
3,925,649	+		PP_5602	0.48	+0.9
3,925,649	+		PP_5602	0.48	+0.5
3,925,650	-		PP_5602	0.48	-2.3
3,925,683	+		PP_5602	0.50	-0.5
3,925,683	+		PP_5602	0.50	+1.0
3,925,684	-		PP_5602	0.50	-0.3
3,925,694	+		PP_5602	0.51	-2.6
3,925,722	+		PP_5602	0.53	+0.0
3,925,759	+		PP_5602	0.55	-0.8
3,925,759	+		PP_5602	0.55	+0.5
3,925,759	+		PP_5602	0.55	+0.8
3,925,760	-		PP_5602	0.55	+0.2
3,925,760	-		PP_5602	0.55	+0.2
3,925,779	+		PP_5602	0.56	-0.4
3,925,779	+		PP_5602	0.56	+3.6
3,925,779	+		PP_5602	0.56	+0.1
3,925,779	+		PP_5602	0.56	+0.3
3,925,810	+		PP_5602	0.58	-0.5
3,925,810	+		PP_5602	0.58	-1.1
3,925,810	+		PP_5602	0.58	+0.3
3,925,810	+		PP_5602	0.58	+0.3
3,925,810	+		PP_5602	0.58	+0.4
3,925,811	-				+0.2
3,925,811	-		PP_5602	0.58	+0.0
3,925,811	-		PP_5602	0.58	-1.3