Strain Fitness in Pseudomonas putida KT2440 around PP_2672

Experiment: BC Lignin Sorghum 20 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 20 vol% (C)
3,059,411	+		PP_2671	0.54	+0.9
3,059,411	+		PP_2671	0.54	+0.2
3,059,411	+		PP_2671	0.54	-1.1
3,059,412	-		PP_2671	0.54	+0.5
3,059,451	+		PP_2671	0.57	+0.6
3,059,451	+		PP_2671	0.57	-0.8
3,059,452	-		PP_2671	0.57	+0.0
3,059,477	-		PP_2671	0.59	-0.5
3,059,477	-		PP_2671	0.59	-0.2
3,059,477	-		PP_2671	0.59	-0.1
3,059,477	-		PP_2671	0.59	-0.1
3,059,489	+		PP_2671	0.60	-0.1
3,059,489	+		PP_2671	0.60	-0.3
3,059,490	-		PP_2671	0.60	+0.1
3,059,593	-		PP_2671	0.68	-0.4
3,059,610	+		PP_2671	0.70	+0.4
3,059,610	+		PP_2671	0.70	-0.2
3,059,610	+		PP_2671	0.70	-0.1
3,059,610	+		PP_2671	0.70	+0.3
3,059,611	-		PP_2671	0.70	-0.4
3,059,884	+				+0.2
3,059,932	+				-0.3
3,059,975	+				+0.4
3,060,002	-				+0.4
3,060,002	-				-0.4
3,060,041	+				-0.6
3,060,293	+				+0.2
3,060,362	+		PP_2672	0.57	+0.6
3,060,362	+		PP_2672	0.57	-0.3
3,060,363	-		PP_2672	0.57	+1.4
3,060,363	-		PP_2672	0.57	-0.0
3,060,363	-		PP_2672	0.57	-2.0
3,060,459	+		PP_2672	0.72	-0.4
3,060,515	-		PP_2672	0.81	+0.6
3,060,691	+				+0.2
3,061,093	+		PP_2673	0.38	-0.4
3,061,464	+				-1.2
3,061,492	+				+0.2
3,061,493	-				-0.9
3,061,493	-				+0.1