Strain Fitness in Pseudomonas putida KT2440 around PP_1689

Experiment: BC Lignin Sorghum 20 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 20 vol% (C)
1,880,347	+				+0.8
1,880,377	+				+0.1
1,880,378	-				+0.2
1,880,463	+		PP_1688	0.15	-3.5
1,880,519	+		PP_1688	0.21	-0.9
1,880,519	+		PP_1688	0.21	+0.9
1,880,520	-		PP_1688	0.21	-0.2
1,880,520	-		PP_1688	0.21	+0.2
1,880,522	+		PP_1688	0.21	-1.0
1,880,523	-		PP_1688	0.21	-0.7
1,880,523	-		PP_1688	0.21	-0.3
1,880,532	+		PP_1688	0.22	+0.5
1,880,533	-		PP_1688	0.22	+0.8
1,880,540	-		PP_1688	0.23	-0.1
1,880,540	-		PP_1688	0.23	-0.1
1,880,658	+		PP_1688	0.36	-1.1
1,880,722	+		PP_1688	0.42	+1.0
1,880,856	+		PP_1688	0.57	-3.0
1,880,982	+		PP_1688	0.70	+0.6
1,880,982	+		PP_1688	0.70	-0.2
1,880,982	+		PP_1688	0.70	-0.5
1,880,982	+		PP_1688	0.70	-0.6
1,880,983	-		PP_1688	0.71	-0.7
1,880,983	-		PP_1688	0.71	-0.1
1,881,122	+		PP_1688	0.85	-1.2
1,881,149	+		PP_1688	0.88	+0.1
1,881,155	+				+2.0
1,881,155	+		PP_1688	0.89	+0.7
1,881,156	-		PP_1688	0.89	-0.1
1,881,156	-		PP_1688	0.89	-1.1
1,881,156	-		PP_1688	0.89	+0.5
1,881,156	-		PP_1688	0.89	-0.5
1,881,156	-		PP_1688	0.89	+1.0
1,881,156	-		PP_1688	0.89	+0.4
1,881,156	-		PP_1688	0.89	+0.1
1,881,156	-		PP_1688	0.89	+1.2
1,881,213	-				+0.4
1,881,285	+				-0.1
1,881,285	+				-1.2
1,881,285	+				-0.6
1,881,285	-				-0.3
1,881,286	-				-1.4
1,881,309	-				-1.9
1,881,309	-				-0.3
1,881,347	+				-2.1
1,881,347	+				-1.9
1,881,347	+				-1.3
1,881,348	-				-2.8
1,881,348	-				-0.0
1,881,360	-				-1.8
1,881,413	+				-1.6
1,881,414	-				-0.7
1,881,414	-				-1.7
1,881,414	-				-2.9
1,881,414	-				-3.5
1,881,414	-				-1.8
1,881,420	-				-1.3
1,881,582	-		PP_1689	0.22	-0.9
1,881,582	-		PP_1689	0.22	-0.4
1,881,582	-		PP_1689	0.22	-1.9
1,881,731	+		PP_1689	0.34	-0.7
1,881,732	-				+1.4
1,881,732	-		PP_1689	0.34	-0.1
1,881,732	-		PP_1689	0.34	-1.4
1,881,893	+		PP_1689	0.47	-0.7
1,881,894	-		PP_1689	0.47	-2.7
1,881,905	-		PP_1689	0.48	-0.4
1,881,928	+		PP_1689	0.50	-2.1
1,881,928	+		PP_1689	0.50	-0.7
1,881,929	-		PP_1689	0.50	-2.4
1,881,947	+		PP_1689	0.51	-2.7
1,881,947	+		PP_1689	0.51	-2.8
1,881,960	+		PP_1689	0.52	-1.7
1,882,024	-		PP_1689	0.57	-0.6
1,882,094	+		PP_1689	0.63	-0.7
1,882,094	+		PP_1689	0.63	-2.2
1,882,095	-		PP_1689	0.63	-1.4
1,882,126	+		PP_1689	0.65	-0.8
1,882,126	+		PP_1689	0.65	-0.9
1,882,127	-		PP_1689	0.65	+0.1
1,882,196	-		PP_1689	0.71	-1.0
1,882,199	+		PP_1689	0.71	-0.7
1,882,199	+		PP_1689	0.71	-0.5
1,882,199	+		PP_1689	0.71	-2.7
1,882,199	+		PP_1689	0.71	-0.8
1,882,199	+		PP_1689	0.71	-0.9
1,882,199	+		PP_1689	0.71	-2.4
1,882,199	+		PP_1689	0.71	-1.3
1,882,199	+		PP_1689	0.71	-2.8
1,882,199	+		PP_1689	0.71	-3.1
1,882,199	+		PP_1689	0.71	-0.6
1,882,200	-		PP_1689	0.71	-1.8
1,882,200	-		PP_1689	0.71	-3.2
1,882,200	-		PP_1689	0.71	-1.3
1,882,200	-		PP_1689	0.71	-1.5
1,882,200	-		PP_1689	0.71	-3.4
1,882,200	-		PP_1689	0.71	-0.1
1,882,200	-		PP_1689	0.71	-2.8
1,882,204	-		PP_1689	0.72	+0.4
1,882,240	+		PP_1689	0.74	-0.7
1,882,240	+		PP_1689	0.74	-0.7
1,882,244	+		PP_1689	0.75	-0.5
1,882,244	+				-0.6
1,882,245	-		PP_1689	0.75	-2.9
1,882,245	-		PP_1689	0.75	-1.4
1,882,245	-		PP_1689	0.75	-1.9
1,882,245	-		PP_1689	0.75	-0.4
1,882,247	+		PP_1689	0.75	-1.4
1,882,248	-		PP_1689	0.75	-1.1
1,882,258	+		PP_1689	0.76	-0.9
1,882,321	+				-2.0
1,882,322	-		PP_1689	0.81	-3.3
1,882,322	-		PP_1689	0.81	-2.6
1,882,322	-		PP_1689	0.81	-2.0
1,882,406	-		PP_1689	0.88	-3.1
1,882,552	+				-2.8
1,882,567	+				-0.2
1,882,602	-				+0.7
1,882,624	+				-0.9
1,882,624	+				-1.2
1,882,626	+				-0.2
1,882,627	-				+0.4
1,882,627	-				-0.7
1,882,738	+				-1.2
1,882,738	+				-1.4
1,882,739	-				-0.0
1,882,739	-				-0.4
1,882,739	-				+0.4
1,882,739	-				-0.5
1,882,739	-				+0.0
1,882,806	+		PP_1690	0.20	+0.3
1,882,807	-		PP_1690	0.20	+0.5
1,882,991	+		PP_1690	0.58	-0.8
1,882,992	-		PP_1690	0.58	+0.1
1,883,101	+		PP_1690	0.81	+0.1
1,883,101	+		PP_1690	0.81	-0.2
1,883,162	+				-0.1
1,883,163	-				-0.6
1,883,163	-				-0.7
1,883,163	-				-1.5
1,883,187	+				-1.1
1,883,294	+				-1.3
1,883,295	-				-0.6
1,883,302	+				-0.0
1,883,313	+				-0.8
1,883,356	+				+0.2
1,883,357	-				-0.3
1,883,358	+				+0.6
1,883,359	-				-0.1
1,883,374	+				+0.3
1,883,375	-				+0.6
1,883,504	+		PP_1691	0.27	-0.6
1,883,516	+		PP_1691	0.32	-0.0
1,883,517	-		PP_1691	0.33	+1.3
1,883,562	+		PP_1691	0.53	+1.1
1,883,563	-		PP_1691	0.53	+1.0