Strain Fitness in Pseudomonas putida KT2440 around PP_1427

Experiment: BC Lignin Sorghum 20 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 20 vol% (C)
1,626,291	+		PP_1426	0.66	-0.2
1,626,292	-		PP_1426	0.66	+1.5
1,626,516	+		PP_1426	0.80	+0.1
1,626,516	+		PP_1426	0.80	-0.6
1,626,662	-		PP_1426	0.89	+0.8
1,626,662	-		PP_1426	0.89	-0.2
1,626,740	+				+0.3
1,626,769	+				+0.3
1,626,769	+				+0.4
1,626,769	+				+0.4
1,626,769	+				-1.2
1,626,770	-				-0.5
1,626,770	-				-0.2
1,626,770	-				-0.3
1,626,770	-				-0.7
1,626,849	+				+1.2
1,626,849	+				+0.5
1,626,850	-				+0.1
1,626,850	-				+0.7
1,626,850	-				-0.9
1,626,853	-				+0.6
1,626,906	+				+0.3
1,626,907	-				-0.2
1,626,932	+				+0.4
1,626,932	+				+1.8
1,626,932	+				-0.1
1,626,934	+				+0.9
1,626,934	+				+1.3
1,626,934	+				+0.7
1,626,934	+				+0.5
1,626,934	+				-1.2
1,626,934	+				+0.3
1,626,935	-				-1.0
1,626,935	-				+0.8
1,626,935	-				+0.1
1,626,963	+				+0.4
1,627,018	+				+0.7
1,627,033	+				-0.3
1,627,083	-				-0.8
1,627,093	-				-0.6
1,627,093	-				-0.1
1,627,116	-				-0.3
1,627,211	+				-0.1
1,627,211	+				-0.3
1,627,211	+				-0.1
1,627,211	+				+0.1
1,627,211	+				-0.6
1,627,211	+				+0.3
1,627,212	-				-1.3
1,627,277	+				-1.0
1,627,357	+		PP_1427	0.14	-0.6
1,627,357	+		PP_1427	0.14	-1.0
1,627,421	+		PP_1427	0.25	-0.6
1,627,421	+		PP_1427	0.25	-0.7
1,627,421	+		PP_1427	0.25	-0.5
1,627,421	+		PP_1427	0.25	-0.1
1,627,422	-		PP_1427	0.26	+1.0
1,627,422	-		PP_1427	0.26	-1.2
1,627,448	-		PP_1427	0.30	-2.7
1,627,487	-		PP_1427	0.37	+0.8
1,627,488	+		PP_1427	0.37	-1.0
1,627,488	+		PP_1427	0.37	+0.0
1,627,489	-		PP_1427	0.37	+0.1
1,627,489	-		PP_1427	0.37	-1.4
1,627,528	+		PP_1427	0.44	-0.2
1,627,528	+		PP_1427	0.44	-1.3
1,627,718	+		PP_1427	0.76	+1.0
1,627,719	-		PP_1427	0.77	+1.0
1,627,817	+				+0.3
1,627,817	+				-0.2
1,627,818	-				+0.6
1,627,821	+				+0.5
1,627,821	+				-0.3
1,627,821	+				+3.2
1,627,821	+				+0.7
1,627,822	-				-0.6
1,627,822	-				-0.1
1,627,822	-				+0.6
1,627,822	-				-0.2
1,627,822	-				+0.6
1,627,822	-				+0.3
1,628,196	+		PP_1428	0.52	-2.6
1,628,196	+		PP_1428	0.52	+0.3
1,628,196	+		PP_1428	0.52	-1.9
1,628,196	+		PP_1428	0.52	-1.1
1,628,197	-		PP_1428	0.52	-0.1
1,628,197	-		PP_1428	0.52	-0.3
1,628,446	+				+0.5
1,628,480	+				+0.1
1,628,481	-				+0.5
1,628,481	-				-1.0
1,628,481	-				+0.0
1,628,481	-				+0.2
1,628,501	+				+0.5
1,628,620	+		PP_1429	0.13	-0.3
1,628,620	+		PP_1429	0.13	-1.0
1,628,621	-		PP_1429	0.13	+0.1
1,628,621	-		PP_1429	0.13	-0.3
1,628,621	-		PP_1429	0.13	+1.5
1,628,621	-		PP_1429	0.13	+0.3
1,628,639	-		PP_1429	0.15	+0.3
1,628,854	+		PP_1429	0.38	+0.6