Experiment: BC Lignin Sorghum 20 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0264 and PP_0265 are separated by 42 nucleotides PP_0265 and PP_0266 are separated by 277 nucleotides PP_0266 and PP_0267 are separated by 457 nucleotides
PP_0264: PP_0264 - Sensor histidine kinase, at 317,927 to 319,741
_0264
PP_0265: PP_0265 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 319,784 to 320,329
_0265
PP_0266: PP_0266 - Agmatine deiminase, at 320,607 to 321,713
_0266
PP_0267: PP_0267 - putative Outer membrane ferric siderophore receptor, at 322,171 to 324,240
_0267
Position (kb) 320
321
322 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 319.629 kb on + strand at 319.629 kb on + strand at 319.629 kb on + strand at 319.632 kb on + strand at 319.632 kb on + strand at 319.632 kb on + strand at 319.633 kb on - strand at 319.633 kb on - strand at 319.662 kb on - strand at 319.662 kb on - strand at 319.662 kb on - strand at 319.664 kb on + strand at 319.664 kb on + strand at 319.664 kb on + strand at 319.664 kb on + strand at 319.665 kb on - strand at 319.774 kb on + strand at 319.775 kb on - strand at 319.775 kb on - strand at 319.775 kb on - strand at 319.781 kb on + strand at 319.781 kb on + strand at 319.782 kb on - strand at 319.782 kb on - strand at 319.786 kb on - strand at 319.786 kb on - strand at 319.897 kb on + strand, within PP_0265 at 319.898 kb on - strand, within PP_0265 at 319.920 kb on + strand, within PP_0265 at 319.920 kb on + strand, within PP_0265 at 319.920 kb on + strand, within PP_0265 at 319.923 kb on + strand, within PP_0265 at 319.924 kb on - strand, within PP_0265 at 319.924 kb on - strand, within PP_0265 at 319.938 kb on + strand, within PP_0265 at 320.143 kb on - strand, within PP_0265 at 320.297 kb on + strand at 320.298 kb on - strand at 320.298 kb on - strand at 320.298 kb on - strand at 320.298 kb on - strand at 320.314 kb on + strand at 320.356 kb on + strand at 320.357 kb on - strand at 320.357 kb on - strand at 320.357 kb on - strand at 320.357 kb on - strand at 320.366 kb on - strand at 320.366 kb on - strand at 320.395 kb on - strand at 320.412 kb on + strand at 320.412 kb on + strand at 320.412 kb on + strand at 320.412 kb on + strand at 320.413 kb on - strand at 320.413 kb on - strand at 320.413 kb on - strand at 320.413 kb on - strand at 320.413 kb on - strand at 320.423 kb on + strand at 320.423 kb on + strand at 320.424 kb on - strand at 320.424 kb on - strand at 320.428 kb on + strand at 320.681 kb on - strand at 320.681 kb on - strand at 320.681 kb on - strand at 320.749 kb on + strand, within PP_0266 at 320.900 kb on + strand, within PP_0266 at 320.900 kb on + strand, within PP_0266 at 320.938 kb on + strand, within PP_0266 at 320.938 kb on + strand, within PP_0266 at 320.938 kb on + strand, within PP_0266 at 320.939 kb on - strand, within PP_0266 at 320.982 kb on + strand, within PP_0266 at 320.982 kb on + strand, within PP_0266 at 320.982 kb on + strand, within PP_0266 at 321.091 kb on + strand, within PP_0266 at 321.091 kb on + strand, within PP_0266 at 321.092 kb on - strand at 321.214 kb on + strand, within PP_0266 at 321.214 kb on + strand, within PP_0266 at 321.215 kb on - strand, within PP_0266 at 321.234 kb on + strand, within PP_0266 at 321.234 kb on + strand, within PP_0266 at 321.235 kb on - strand, within PP_0266 at 321.276 kb on + strand, within PP_0266 at 321.276 kb on + strand, within PP_0266 at 321.299 kb on - strand, within PP_0266 at 321.299 kb on - strand, within PP_0266 at 321.299 kb on - strand, within PP_0266 at 321.334 kb on - strand, within PP_0266 at 321.334 kb on - strand, within PP_0266 at 321.334 kb on - strand, within PP_0266 at 321.334 kb on - strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.516 kb on + strand, within PP_0266 at 321.517 kb on - strand, within PP_0266 at 321.517 kb on - strand, within PP_0266 at 321.517 kb on - strand, within PP_0266 at 321.790 kb on + strand at 321.818 kb on - strand at 321.818 kb on - strand at 321.860 kb on + strand at 321.860 kb on + strand at 321.860 kb on + strand at 321.868 kb on + strand at 321.868 kb on + strand at 321.895 kb on + strand at 321.896 kb on - strand at 322.166 kb on + strand at 322.181 kb on + strand at 322.181 kb on + strand at 322.181 kb on + strand at 322.182 kb on - strand at 322.182 kb on - strand at 322.250 kb on + strand at 322.250 kb on + strand at 322.250 kb on + strand at 322.250 kb on + strand at 322.251 kb on - strand at 322.251 kb on - strand at 322.251 kb on - strand at 322.253 kb on + strand at 322.253 kb on + strand at 322.253 kb on + strand at 322.254 kb on - strand at 322.254 kb on - strand at 322.338 kb on - strand at 322.338 kb on - strand at 322.345 kb on + strand at 322.345 kb on + strand at 322.346 kb on - strand at 322.346 kb on - strand at 322.346 kb on - strand at 322.348 kb on + strand at 322.348 kb on + strand at 322.348 kb on + strand at 322.348 kb on + strand at 322.349 kb on - strand at 322.410 kb on - strand, within PP_0267 at 322.540 kb on + strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.541 kb on - strand, within PP_0267 at 322.655 kb on + strand, within PP_0267 at 322.656 kb on - strand, within PP_0267 at 322.670 kb on + strand, within PP_0267 at 322.670 kb on + strand, within PP_0267 at 322.670 kb on + strand, within PP_0267
Per-strain Table
Position Strand Gene LocusTag Fraction BC Lignin Sorghum 20 vol% (C) remove 319,629 + +0.8 319,629 + +0.0 319,629 + -0.3 319,632 + +0.5 319,632 + -1.2 319,632 + +0.3 319,633 - -0.6 319,633 - -2.4 319,662 - -0.2 319,662 - -0.2 319,662 - -0.1 319,664 + +0.1 319,664 + -0.7 319,664 + -1.3 319,664 + +1.0 319,665 - -0.2 319,774 + -2.4 319,775 - -0.0 319,775 - +0.9 319,775 - +0.0 319,781 + -0.9 319,781 + +0.6 319,782 - -1.2 319,782 - -0.1 319,786 - -4.0 319,786 - +0.4 319,897 + PP_0265 0.21 +0.8 319,898 - PP_0265 0.21 +0.3 319,920 + PP_0265 0.25 +0.2 319,920 + PP_0265 0.25 -0.4 319,920 + PP_0265 0.25 +0.8 319,923 + PP_0265 0.25 +0.1 319,924 - PP_0265 0.26 +0.2 319,924 - PP_0265 0.26 +0.0 319,938 + PP_0265 0.28 +0.2 320,143 - PP_0265 0.66 +1.0 320,297 + +1.1 320,298 - +0.4 320,298 - +0.1 320,298 - +0.1 320,298 - -0.4 320,314 + -0.4 320,356 + +1.4 320,357 - +1.2 320,357 - -0.1 320,357 - +0.1 320,357 - +0.2 320,366 - +0.7 320,366 - -0.6 320,395 - +0.1 320,412 + +0.2 320,412 + +0.7 320,412 + -0.3 320,412 + -0.2 320,413 - +0.8 320,413 - -0.1 320,413 - +0.5 320,413 - +0.4 320,413 - +1.4 320,423 + -0.6 320,423 + -1.7 320,424 - +0.1 320,424 - +0.2 320,428 + +0.4 320,681 - +0.8 320,681 - +0.5 320,681 - +1.6 320,749 + PP_0266 0.13 -0.4 320,900 + PP_0266 0.26 +0.6 320,900 + PP_0266 0.26 +0.4 320,938 + PP_0266 0.30 +0.6 320,938 + PP_0266 0.30 +0.0 320,938 + PP_0266 0.30 -0.7 320,939 - PP_0266 0.30 +0.0 320,982 + PP_0266 0.34 -0.4 320,982 + PP_0266 0.34 -0.2 320,982 + PP_0266 0.34 -1.0 321,091 + PP_0266 0.44 -0.3 321,091 + PP_0266 0.44 -0.6 321,092 - +0.2 321,214 + PP_0266 0.55 +0.1 321,214 + PP_0266 0.55 -2.0 321,215 - PP_0266 0.55 +1.1 321,234 + PP_0266 0.57 -0.8 321,234 + PP_0266 0.57 -1.9 321,235 - PP_0266 0.57 -1.4 321,276 + PP_0266 0.60 -0.1 321,276 + PP_0266 0.60 -1.2 321,299 - PP_0266 0.63 -0.4 321,299 - PP_0266 0.63 +3.2 321,299 - PP_0266 0.63 +2.1 321,334 - PP_0266 0.66 -1.3 321,334 - PP_0266 0.66 -0.4 321,334 - PP_0266 0.66 +0.0 321,334 - PP_0266 0.66 -1.1 321,516 + PP_0266 0.82 +0.3 321,516 + PP_0266 0.82 -2.2 321,516 + PP_0266 0.82 +0.5 321,516 + PP_0266 0.82 +0.0 321,516 + PP_0266 0.82 -1.8 321,517 - PP_0266 0.82 +0.9 321,517 - PP_0266 0.82 -1.7 321,517 - PP_0266 0.82 +0.5 321,790 + +0.7 321,818 - -2.0 321,818 - +0.7 321,860 + +0.4 321,860 + -1.1 321,860 + +0.5 321,868 + -1.8 321,868 + -1.2 321,895 + +0.5 321,896 - -1.2 322,166 + -0.8 322,181 + +0.8 322,181 + -0.4 322,181 + +0.4 322,182 - -0.1 322,182 - -0.3 322,250 + -0.3 322,250 + -0.4 322,250 + -0.1 322,250 + -0.7 322,251 - +0.5 322,251 - -1.8 322,251 - +0.1 322,253 + -0.2 322,253 + -1.0 322,253 + -1.0 322,254 - +0.5 322,254 - +0.3 322,338 - -0.3 322,338 - +0.3 322,345 + +0.7 322,345 + +1.0 322,346 - +0.4 322,346 - -0.5 322,346 - -0.7 322,348 + -0.5 322,348 + -1.2 322,348 + -0.7 322,348 + +0.8 322,349 - -0.4 322,410 - PP_0267 0.12 -0.2 322,540 + PP_0267 0.18 -0.1 322,541 - PP_0267 0.18 +0.3 322,541 - PP_0267 0.18 +1.0 322,541 - PP_0267 0.18 -0.4 322,541 - PP_0267 0.18 +0.2 322,541 - PP_0267 0.18 +0.7 322,655 + PP_0267 0.23 -0.4 322,656 - PP_0267 0.23 -0.4 322,670 + PP_0267 0.24 +0.2 322,670 + PP_0267 0.24 +0.5 322,670 + PP_0267 0.24 +0.2
Or see this region's nucleotide sequence