Strain Fitness in Pseudomonas putida KT2440 around PP_0194

Experiment: BC Lignin Sorghum 20 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0191 and PP_0192 are separated by 8 nucleotidesPP_0192 and PP_0194 are separated by 154 nucleotidesPP_0194 and PP_0195 overlap by 22 nucleotidesPP_0195 and PP_0196 are separated by 50 nucleotides PP_0191: PP_0191 - Transcriptional regulatory protein AlgQ, at 243,029 to 243,499 _0191 PP_0192: PP_0192 - putative FKBP-type 25 kDa peptidyl-prolyl cis-trans isomerase, at 243,508 to 244,170 _0192 PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314 _0194 PP_0195: PP_0195 - conserved protein of unknown function, at 245,293 to 245,772 _0195 PP_0196: PP_0196 - putative of ABC superfamily informational factor: ATP-binding components, at 245,823 to 247,733 _0196 Position (kb) 244 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 243.554 kb on + strandat 243.554 kb on + strandat 243.554 kb on + strandat 243.555 kb on - strandat 243.590 kb on + strand, within PP_0192at 243.590 kb on + strand, within PP_0192at 243.610 kb on + strand, within PP_0192at 243.611 kb on - strand, within PP_0192at 243.743 kb on + strand, within PP_0192at 243.744 kb on - strand, within PP_0192at 243.744 kb on - strand, within PP_0192at 243.744 kb on - strand, within PP_0192at 243.807 kb on - strand, within PP_0192at 243.824 kb on - strand, within PP_0192at 243.824 kb on - strand, within PP_0192at 243.839 kb on + strand, within PP_0192at 243.839 kb on + strand, within PP_0192at 243.856 kb on - strand, within PP_0192at 243.978 kb on - strand, within PP_0192at 244.067 kb on + strand, within PP_0192at 244.068 kb on - strand, within PP_0192at 244.136 kb on + strandat 244.137 kb on - strandat 244.162 kb on + strandat 244.187 kb on + strandat 244.187 kb on + strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.210 kb on + strandat 244.242 kb on - strandat 244.249 kb on - strandat 244.287 kb on + strandat 244.287 kb on + strandat 244.287 kb on + strandat 244.287 kb on + strandat 244.288 kb on - strandat 244.288 kb on - strandat 244.288 kb on - strandat 244.288 kb on - strandat 244.288 kb on - strandat 244.290 kb on + strandat 244.290 kb on + strandat 244.290 kb on + strandat 244.290 kb on + strandat 244.291 kb on - strandat 244.291 kb on - strandat 244.319 kb on + strandat 244.347 kb on + strandat 244.351 kb on + strandat 244.352 kb on - strandat 244.359 kb on + strandat 244.360 kb on - strandat 244.531 kb on + strand, within PP_0194at 244.532 kb on - strandat 244.625 kb on + strand, within PP_0194at 244.625 kb on + strand, within PP_0194at 244.681 kb on - strand, within PP_0194at 244.684 kb on + strand, within PP_0194at 244.684 kb on + strand, within PP_0194at 244.684 kb on + strand, within PP_0194at 244.684 kb on + strand, within PP_0194at 244.685 kb on - strand, within PP_0194at 245.053 kb on + strand, within PP_0194at 245.629 kb on + strand, within PP_0195at 245.630 kb on - strand, within PP_0195at 245.735 kb on + strandat 245.735 kb on + strandat 245.735 kb on + strandat 245.736 kb on - strandat 245.807 kb on - strandat 245.848 kb on + strandat 245.849 kb on - strandat 245.849 kb on - strandat 245.872 kb on + strandat 245.872 kb on + strandat 245.872 kb on + strandat 245.872 kb on + strandat 245.873 kb on - strandat 245.873 kb on - strandat 246.069 kb on + strand, within PP_0196at 246.069 kb on + strand, within PP_0196at 246.069 kb on + strand, within PP_0196at 246.069 kb on + strand, within PP_0196at 246.069 kb on + strand, within PP_0196at 246.070 kb on - strand, within PP_0196at 246.070 kb on - strand, within PP_0196at 246.190 kb on - strand, within PP_0196at 246.190 kb on - strand, within PP_0196at 246.190 kb on - strandat 246.192 kb on - strand, within PP_0196

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Per-strain Table

Position Strand Gene LocusTag Fraction BC Lignin Sorghum 20 vol% (C)
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243,554 + +1.3
243,554 + +0.2
243,554 + -1.3
243,555 - +0.2
243,590 + PP_0192 0.12 +0.4
243,590 + PP_0192 0.12 +0.9
243,610 + PP_0192 0.15 +0.3
243,611 - PP_0192 0.16 -0.4
243,743 + PP_0192 0.35 -0.6
243,744 - PP_0192 0.36 -0.2
243,744 - PP_0192 0.36 -0.3
243,744 - PP_0192 0.36 -0.6
243,807 - PP_0192 0.45 -0.4
243,824 - PP_0192 0.48 -0.4
243,824 - PP_0192 0.48 +0.9
243,839 + PP_0192 0.50 -0.3
243,839 + PP_0192 0.50 +0.5
243,856 - PP_0192 0.52 +0.5
243,978 - PP_0192 0.71 +0.0
244,067 + PP_0192 0.84 -0.2
244,068 - PP_0192 0.84 -0.8
244,136 + +0.1
244,137 - +0.6
244,162 + -0.8
244,187 + +0.4
244,187 + -0.6
244,188 - -0.5
244,188 - +1.2
244,188 - +0.2
244,210 + +0.3
244,242 - -1.5
244,249 - +2.1
244,287 + +1.8
244,287 + -0.7
244,287 + +0.2
244,287 + +0.2
244,288 - -0.2
244,288 - +1.0
244,288 - +0.9
244,288 - -0.0
244,288 - -0.0
244,290 + +0.8
244,290 + -0.3
244,290 + +0.2
244,290 + +0.3
244,291 - +0.3
244,291 - +0.0
244,319 + +0.2
244,347 + +0.0
244,351 + +0.6
244,352 - -0.4
244,359 + +0.1
244,360 - -0.4
244,531 + PP_0194 0.21 -0.2
244,532 - -0.1
244,625 + PP_0194 0.30 -0.7
244,625 + PP_0194 0.30 -0.1
244,681 - PP_0194 0.36 -1.1
244,684 + PP_0194 0.36 -1.3
244,684 + PP_0194 0.36 +0.1
244,684 + PP_0194 0.36 -0.9
244,684 + PP_0194 0.36 -0.1
244,685 - PP_0194 0.36 -0.1
245,053 + PP_0194 0.74 -1.4
245,629 + PP_0195 0.70 -0.1
245,630 - PP_0195 0.70 -2.9
245,735 + +0.5
245,735 + -0.8
245,735 + -2.3
245,736 - -0.3
245,807 - +0.3
245,848 + +0.8
245,849 - -0.6
245,849 - -0.1
245,872 + -0.0
245,872 + +0.7
245,872 + -0.7
245,872 + +0.1
245,873 - +0.3
245,873 - -0.1
246,069 + PP_0196 0.13 +0.3
246,069 + PP_0196 0.13 -0.1
246,069 + PP_0196 0.13 -0.2
246,069 + PP_0196 0.13 -2.2
246,069 + PP_0196 0.13 -0.3
246,070 - PP_0196 0.13 +2.6
246,070 - PP_0196 0.13 -0.2
246,190 - PP_0196 0.19 -0.1
246,190 - PP_0196 0.19 +0.8
246,190 - +0.9
246,192 - PP_0196 0.19 -3.3

Or see this region's nucleotide sequence