Strain Fitness in Pseudomonas putida KT2440 around PP_5664

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
4,798,691	+				+0.8
4,798,691	+				-0.4
4,798,711	-				+0.3
4,798,721	+				-2.7
4,798,721	+				-0.5
4,798,721	+				+0.9
4,798,845	+				+2.0
4,799,014	-		PP_4226	0.23	-3.8
4,799,083	+		PP_4226	0.37	-1.5
4,799,084	-		PP_4226	0.37	-2.9
4,799,084	-		PP_4226	0.37	-0.6
4,799,084	-		PP_4226	0.37	-2.5
4,799,115	-		PP_4226	0.44	-2.6
4,799,425	+				+2.2
4,799,426	-				-2.8
4,799,426	-				-2.3
4,799,471	+		PP_5664	0.11	-1.6
4,799,471	+		PP_5664	0.11	-0.5
4,799,472	-		PP_5664	0.12	+0.4
4,799,472	-		PP_5664	0.12	+1.9
4,799,476	+		PP_5664	0.12	+0.5
4,799,477	-		PP_5664	0.12	-0.2
4,799,477	-		PP_5664	0.12	-3.9
4,799,517	+		PP_5664	0.19	+0.6
4,799,557	+		PP_5664	0.25	+1.8
4,799,636	+		PP_5664	0.38	+0.4
4,799,636	+		PP_5664	0.38	-2.4
4,799,641	-		PP_5664	0.39	-0.6
4,799,677	-		PP_5664	0.45	-2.1
4,799,797	+		PP_5664	0.64	+1.0
4,799,884	-		PP_5664	0.78	+0.4
4,799,962	+				-0.0
4,799,963	-				-2.3
4,799,963	-				-3.3
4,799,968	+				+0.2
4,799,968	+				+0.8
4,800,024	+		PP_4227	0.12	+0.8
4,800,025	-		PP_4227	0.12	+0.6
4,800,392	+				-1.3
4,800,468	+				+0.7
4,800,506	+				+1.4
4,800,528	+				+0.1
4,800,530	+				-3.4
4,800,530	+				+0.5
4,800,531	-				+0.1
4,800,580	+		PP_4228	0.14	+0.3
4,800,605	+		PP_4228	0.18	+1.4
4,800,654	-		PP_4228	0.26	+0.7
4,800,680	-		PP_4228	0.30	-1.2
4,800,829	+		PP_4228	0.54	-3.4
4,800,979	+		PP_4228	0.78	+0.4
4,800,979	+		PP_4228	0.78	-0.5
4,800,979	+		PP_4228	0.78	-3.0