Strain Fitness in Pseudomonas putida KT2440 around PP_5590

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,630,128	-		PP_3200	0.44	-0.3
3,630,128	-		PP_3200	0.44	+0.2
3,630,130	+		PP_3200	0.44	+0.4
3,630,131	-				-0.4
3,630,131	-		PP_3200	0.44	-0.4
3,630,131	-		PP_3200	0.44	-1.7
3,630,171	+		PP_3200	0.46	-0.3
3,630,175	+		PP_3200	0.46	-1.3
3,630,175	+		PP_3200	0.46	+0.7
3,630,175	+		PP_3200	0.46	+1.5
3,630,352	+		PP_3200	0.57	+0.0
3,630,352	+		PP_3200	0.57	+0.9
3,630,353	-		PP_3200	0.57	-0.4
3,630,393	-		PP_3200	0.59	+0.7
3,630,393	-		PP_3200	0.59	-1.7
3,630,393	-		PP_3200	0.59	+0.4
3,630,446	-		PP_3200	0.62	+1.5
3,630,455	-		PP_3200	0.63	+0.5
3,630,863	-		PP_3200	0.87	-1.9
3,630,863	-		PP_3200	0.87	-0.9
3,630,863	-		PP_3200	0.87	-2.7
3,630,863	-		PP_3200	0.87	+0.0
3,630,985	+				-3.6
3,630,986	-				-2.4
3,631,118	+				+0.6
3,631,122	-				+1.5
3,631,291	-		PP_5590	0.13	+0.7
3,631,291	-		PP_5590	0.13	-4.2
3,631,291	-		PP_5590	0.13	+0.6
3,631,311	+		PP_5590	0.15	+1.2
3,631,449	+		PP_5590	0.25	+0.9
3,631,449	+		PP_5590	0.25	-0.8
3,631,449	+		PP_5590	0.25	-2.2
3,631,450	-		PP_5590	0.25	-0.6
3,631,504	-		PP_5590	0.29	-0.1
3,631,884	+		PP_5590	0.57	-0.3
3,631,884	+		PP_5590	0.57	-0.1
3,631,885	-				-1.8
3,631,885	-		PP_5590	0.57	-0.5
3,631,980	+		PP_5590	0.64	-1.8
3,632,040	+		PP_5590	0.68	-1.4
3,632,040	+		PP_5590	0.68	-2.9
3,632,040	+		PP_5590	0.68	-0.9
3,632,040	+		PP_5590	0.68	-0.7
3,632,041	-		PP_5590	0.68	-1.5
3,632,041	-		PP_5590	0.68	-3.2
3,632,041	-		PP_5590	0.68	-2.9
3,632,049	+		PP_5590	0.69	-0.3
3,632,049	+		PP_5590	0.69	+1.3
3,632,205	+		PP_5590	0.80	-0.4
3,632,206	-		PP_5590	0.80	-0.8
3,632,206	-		PP_5590	0.80	+0.9
3,632,206	-		PP_5590	0.80	+1.3
3,632,206	-		PP_5590	0.80	-1.2
3,632,208	+		PP_5590	0.80	+1.4
3,632,209	-		PP_5590	0.81	+0.1
3,632,250	+		PP_5590	0.84	-2.5
3,632,251	-		PP_5590	0.84	-1.5
3,632,251	-		PP_5590	0.84	-2.0
3,632,403	+				-0.2
3,632,507	+				+0.1
3,632,508	-				+0.3
3,632,545	-				-0.4
3,632,545	-				-2.8
3,633,043	-		PP_3201	0.48	-1.0
3,633,043	-		PP_3201	0.48	+0.4
3,633,129	+		PP_3201	0.56	-0.3
3,633,130	-		PP_3201	0.57	-3.1
3,633,159	+		PP_3201	0.59	-0.0
3,633,159	+				-1.3
3,633,160	-		PP_3201	0.59	+1.4
3,633,213	+		PP_3201	0.64	+0.4
3,633,214	-		PP_3201	0.65	-2.0