Strain Fitness in Pseudomonas putida KT2440 around PP_5562

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,496,578	-		PP_3100	0.61	+0.3
3,496,701	-		PP_3100	0.82	+1.8
3,496,707	+		PP_3100	0.83	-0.0
3,496,707	+		PP_3100	0.83	+0.8
3,496,708	-		PP_3100	0.83	-0.4
3,496,833	+				+1.7
3,497,101	-		PP_5562	0.35	+0.3
3,497,101	-		PP_5562	0.35	-2.3
3,497,101	-		PP_5562	0.35	+1.7
3,497,116	-		PP_5562	0.37	-3.9
3,497,133	+		PP_5562	0.39	+0.9
3,497,319	-		PP_5562	0.64	+1.4
3,497,319	-		PP_5562	0.64	+0.1
3,497,370	+		PP_5562	0.70	+1.3
3,497,370	+		PP_5562	0.70	+0.0
3,497,371	-		PP_5562	0.70	+0.0
3,497,440	-		PP_5562	0.79	+1.2
3,497,490	+		PP_5562	0.86	+1.4
3,497,679	+				+0.6
3,497,679	+				-1.9
3,497,679	+				-0.5
3,497,680	-				+0.4
3,497,685	+				+0.2
3,497,685	+				-0.8
3,497,685	+				+0.0
3,497,685	+				+1.0
3,497,686	-				-0.2
3,497,686	-				+1.7
3,497,686	-				+0.4
3,497,686	-				-1.4
3,497,686	-				-4.6
3,497,686	-				+0.4
3,497,849	+				+0.6
3,497,849	+				+1.9
3,498,012	+				-0.3
3,498,012	+				-1.7
3,498,012	+				+1.6
3,498,012	+				+1.2
3,498,012	+				-1.7
3,498,012	+				+0.5
3,498,012	+				+0.5
3,498,013	-				+0.4
3,498,013	-				+0.5
3,498,013	-				-0.9
3,498,013	-				-4.7
3,498,029	+				+0.4
3,498,029	+				-0.1
3,498,029	+				-2.3
3,498,029	+				-0.3
3,498,030	-				-1.2
3,498,030	-				-0.1
3,498,034	-				-0.9
3,498,034	-				-2.3
3,498,048	-				+0.6
3,498,048	-				+0.2
3,498,091	-				+2.7
3,498,147	-				-1.0
3,498,147	-				-3.0
3,498,147	-				+0.8
3,498,147	-				-0.3
3,498,175	-				+0.3
3,498,186	+				+1.7
3,498,197	-				-0.2
3,498,218	-				-2.5
3,498,320	+				-1.1
3,498,372	+		PP_5563	0.13	+1.1
3,498,372	+		PP_5563	0.13	-0.2
3,498,373	-		PP_5563	0.13	+0.5
3,498,373	-		PP_5563	0.13	+0.9
3,498,517	+		PP_5563	0.39	+1.8
3,498,517	+		PP_5563	0.39	+0.1
3,498,517	+		PP_5563	0.39	-2.7
3,498,551	+		PP_5563	0.45	-1.1