Strain Fitness in Pseudomonas putida KT2440 around PP_5455

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0696 and PP_0697 overlap by 4 nucleotidesPP_0697 and PP_5455 are separated by 57 nucleotidesPP_5455 and PP_0698 overlap by 61 nucleotides PP_0696: PP_0696 - conserved protein of unknown function, at 809,434 to 810,309 _0696 PP_0697: PP_0697 - ribosomal-protein-S18-alanine N-acetyltransferase, at 810,306 to 810,761 _0697 PP_5455: PP_5455 - conserved exported protein of unknown function, at 810,819 to 811,394 _5455 PP_0698: PP_0698 - Transcriptional regulator, LysR family, at 811,334 to 812,251 _0698 Position (kb) 810 811 812Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 810.359 kb on - strand, within PP_0697at 810.359 kb on - strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.362 kb on + strand, within PP_0697at 810.363 kb on - strand, within PP_0697at 810.372 kb on + strand, within PP_0697at 810.588 kb on + strand, within PP_0697at 810.589 kb on - strand, within PP_0697at 810.645 kb on + strand, within PP_0697at 810.646 kb on - strand, within PP_0697at 810.655 kb on - strand, within PP_0697at 810.663 kb on + strand, within PP_0697at 810.696 kb on + strand, within PP_0697at 810.696 kb on + strand, within PP_0697at 810.696 kb on + strand, within PP_0697at 810.696 kb on + strand, within PP_0697at 810.697 kb on - strand, within PP_0697at 810.697 kb on - strand, within PP_0697at 810.697 kb on - strand, within PP_0697at 810.697 kb on - strand, within PP_0697at 810.700 kb on - strand, within PP_0697at 810.743 kb on + strandat 810.744 kb on - strandat 810.813 kb on + strandat 810.851 kb on + strandat 810.851 kb on + strandat 810.851 kb on + strandat 810.851 kb on + strandat 810.852 kb on - strandat 810.946 kb on + strand, within PP_5455at 810.947 kb on - strand, within PP_5455at 810.947 kb on - strand, within PP_5455at 810.960 kb on + strand, within PP_5455at 810.968 kb on - strand, within PP_5455at 810.968 kb on - strand, within PP_5455at 811.036 kb on + strand, within PP_5455at 811.190 kb on + strand, within PP_5455at 811.211 kb on + strand, within PP_5455at 811.212 kb on - strand, within PP_5455at 811.213 kb on + strand, within PP_5455at 811.214 kb on - strand, within PP_5455at 811.379 kb on + strandat 811.379 kb on + strandat 811.379 kb on + strandat 811.379 kb on + strandat 811.485 kb on + strand, within PP_0698at 811.611 kb on + strand, within PP_0698at 811.612 kb on - strand, within PP_0698at 811.788 kb on + strand, within PP_0698at 811.788 kb on + strand, within PP_0698at 811.788 kb on + strand, within PP_0698at 811.789 kb on - strand, within PP_0698at 811.789 kb on - strand, within PP_0698at 811.789 kb on - strandat 812.135 kb on + strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.136 kb on - strand, within PP_0698at 812.301 kb on - strandat 812.301 kb on - strandat 812.301 kb on - strandat 812.312 kb on + strandat 812.312 kb on + strandat 812.312 kb on + strandat 812.312 kb on + strandat 812.313 kb on - strandat 812.313 kb on - strandat 812.313 kb on - strandat 812.313 kb on - strandat 812.323 kb on - strandat 812.361 kb on + strandat 812.362 kb on - strandat 812.362 kb on - strandat 812.362 kb on - strandat 812.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
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810,359 - PP_0697 0.12 +0.3
810,359 - PP_0697 0.12 +1.8
810,362 + PP_0697 0.12 -1.3
810,362 + PP_0697 0.12 -3.9
810,362 + PP_0697 0.12 +1.1
810,362 + PP_0697 0.12 +2.0
810,362 + PP_0697 0.12 +1.3
810,363 - PP_0697 0.12 +0.6
810,372 + PP_0697 0.14 +0.1
810,588 + PP_0697 0.62 +0.6
810,589 - PP_0697 0.62 -0.7
810,645 + PP_0697 0.74 -3.3
810,646 - PP_0697 0.75 -0.5
810,655 - PP_0697 0.77 +2.1
810,663 + PP_0697 0.78 +1.1
810,696 + PP_0697 0.86 +0.5
810,696 + PP_0697 0.86 +1.8
810,696 + PP_0697 0.86 +0.9
810,696 + PP_0697 0.86 +1.5
810,697 - PP_0697 0.86 +0.3
810,697 - PP_0697 0.86 +0.7
810,697 - PP_0697 0.86 +0.8
810,697 - PP_0697 0.86 -0.6
810,700 - PP_0697 0.86 -2.9
810,743 + +0.3
810,744 - -0.6
810,813 + -0.7
810,851 + +0.2
810,851 + -0.3
810,851 + -2.3
810,851 + -0.4
810,852 - -2.9
810,946 + PP_5455 0.22 -2.9
810,947 - PP_5455 0.22 -0.3
810,947 - PP_5455 0.22 +1.0
810,960 + PP_5455 0.24 -0.7
810,968 - PP_5455 0.26 -4.2
810,968 - PP_5455 0.26 +0.1
811,036 + PP_5455 0.38 -1.1
811,190 + PP_5455 0.64 -0.0
811,211 + PP_5455 0.68 -0.7
811,212 - PP_5455 0.68 -0.2
811,213 + PP_5455 0.68 -1.3
811,214 - PP_5455 0.69 -0.5
811,379 + +0.9
811,379 + +1.1
811,379 + -3.1
811,379 + +0.3
811,485 + PP_0698 0.16 +1.8
811,611 + PP_0698 0.30 -0.3
811,612 - PP_0698 0.30 +0.2
811,788 + PP_0698 0.49 -1.2
811,788 + PP_0698 0.49 -0.6
811,788 + PP_0698 0.49 +1.1
811,789 - PP_0698 0.50 -3.9
811,789 - PP_0698 0.50 -3.6
811,789 - -0.7
812,135 + PP_0698 0.87 +0.3
812,136 - PP_0698 0.87 +1.2
812,136 - PP_0698 0.87 -0.5
812,136 - PP_0698 0.87 +2.6
812,136 - PP_0698 0.87 +1.1
812,136 - PP_0698 0.87 -2.9
812,301 - -3.1
812,301 - +0.4
812,301 - +1.6
812,312 + -0.0
812,312 + +0.1
812,312 + -0.0
812,312 + -4.1
812,313 - -1.2
812,313 - -1.3
812,313 - +0.4
812,313 - +0.1
812,323 - +1.6
812,361 + +0.5
812,362 - -0.5
812,362 - -0.5
812,362 - -4.3
812,366 - +1.1

Or see this region's nucleotide sequence