Strain Fitness in Pseudomonas putida KT2440 around PP_5139

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
5,862,901	-				+0.3
5,862,931	-				+0.2
5,862,931	-				+0.9
5,862,970	+				-0.3
5,862,970	+				-1.1
5,862,970	+				+1.2
5,862,970	+				-0.4
5,862,971	-				+1.3
5,862,971	-				-0.8
5,862,971	-				-2.3
5,863,020	+				-0.9
5,863,101	+				+1.7
5,863,101	+				+0.3
5,863,101	+				+1.3
5,863,101	+				-2.9
5,863,107	+		PP_5138	0.10	-1.4
5,863,107	+		PP_5138	0.10	+0.1
5,863,108	-		PP_5138	0.10	-2.3
5,863,108	-		PP_5138	0.10	+0.7
5,863,108	-		PP_5138	0.10	-0.2
5,863,108	-		PP_5138	0.10	-1.2
5,863,424	+		PP_5138	0.47	+1.3
5,863,564	-		PP_5138	0.63	+0.1
5,863,564	-		PP_5138	0.63	-4.3
5,863,587	+		PP_5138	0.65	+1.0
5,863,587	+				-0.4
5,863,587	+		PP_5138	0.65	+2.3
5,863,587	+		PP_5138	0.65	+2.0
5,863,587	+		PP_5138	0.65	+2.0
5,863,587	+		PP_5138	0.65	-3.6
5,863,588	-		PP_5138	0.65	-1.4
5,863,588	-		PP_5138	0.65	+0.3
5,863,588	-		PP_5138	0.65	+1.3
5,863,588	-		PP_5138	0.65	-0.6
5,863,588	-		PP_5138	0.65	+1.2
5,863,588	-		PP_5138	0.65	+0.9
5,863,590	+		PP_5138	0.66	-0.8
5,863,590	+		PP_5138	0.66	-0.3
5,863,590	+		PP_5138	0.66	+0.5
5,863,590	+		PP_5138	0.66	+1.4
5,863,704	-		PP_5138	0.79	-2.7
5,863,744	-		PP_5138	0.83	-3.6
5,863,860	+				+0.2
5,863,860	+				+0.3
5,863,860	+				-3.2
5,863,861	-				-0.3
5,863,861	-				-3.7
5,863,861	-				+0.8
5,863,861	-				+0.4
5,863,861	-				+1.8
5,863,861	-				+1.7
5,863,861	-				+1.7
5,863,861	-				+0.5
5,863,890	+				+0.2
5,863,890	+				-0.4
5,863,890	+				+1.4
5,863,890	+				-0.1
5,863,890	+				+0.4
5,863,890	+				-3.2
5,863,890	+				-2.1
5,863,890	+				-1.2
5,863,890	+				-0.6
5,863,891	-				+1.0
5,863,891	-				-0.2
5,863,891	-				+2.2
5,863,891	-				+0.9
5,863,891	-				-0.8
5,863,899	+				+0.7
5,863,899	+				-0.3
5,863,900	-				-2.4
5,864,247	+		PP_5139	0.15	-2.7
5,864,247	+		PP_5139	0.15	-2.2
5,864,574	+		PP_5139	0.30	-1.9
5,865,014	+		PP_5139	0.50	-2.5
5,865,057	+		PP_5139	0.51	-3.3
5,865,057	+		PP_5139	0.51	-3.1
5,865,058	-		PP_5139	0.51	-3.1
5,865,091	+		PP_5139	0.53	+0.2
5,865,508	+		PP_5139	0.71	-1.4
5,865,537	-		PP_5139	0.73	-2.7
5,865,556	+		PP_5139	0.74	-2.3
5,865,556	+		PP_5139	0.74	-3.5
5,865,556	+		PP_5139	0.74	-2.5
5,865,557	-		PP_5139	0.74	+1.3
5,865,615	+		PP_5139	0.76	-2.7
5,865,615	+		PP_5139	0.76	+0.2
5,865,616	-				+4.6
5,865,616	-		PP_5139	0.76	-1.2
5,866,203	+				-2.7
5,866,288	+		PP_5140	0.12	-0.8
5,866,288	+		PP_5140	0.12	-2.6
5,866,291	+		PP_5140	0.13	-0.8
5,866,292	-		PP_5140	0.13	-0.2
5,866,292	-		PP_5140	0.13	-0.7
5,866,339	+				+0.8
5,866,340	-		PP_5140	0.24	+0.7
5,866,349	-		PP_5140	0.26	-0.3
5,866,724	+				-0.0
5,866,725	-				-0.0
5,866,725	-				+0.9
5,866,732	+				+1.4
5,866,732	+				+0.6
5,866,732	+				-0.1
5,866,732	+				+1.0