Strain Fitness in Pseudomonas putida KT2440 around PP_5135

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
5,857,987	+		PP_5134	0.39	-1.5
5,857,987	+		PP_5134	0.39	-2.2
5,858,035	-		PP_5134	0.43	-1.7
5,858,239	+		PP_5134	0.57	-0.6
5,858,239	+		PP_5134	0.57	+1.0
5,858,239	+		PP_5134	0.57	+0.3
5,858,240	-		PP_5134	0.57	-1.9
5,858,240	-		PP_5134	0.57	+0.5
5,858,240	-		PP_5134	0.57	+1.5
5,858,283	+		PP_5134	0.61	-0.6
5,858,284	-		PP_5134	0.61	-0.2
5,858,457	-		PP_5134	0.73	-0.2
5,858,520	+		PP_5134	0.78	+1.5
5,858,520	+		PP_5134	0.78	-0.8
5,858,520	+		PP_5134	0.78	-2.4
5,858,521	-		PP_5134	0.78	+0.3
5,858,521	-		PP_5134	0.78	+0.6
5,858,581	+		PP_5134	0.82	-1.6
5,858,582	-		PP_5134	0.82	-2.2
5,858,862	-				+0.2
5,858,876	+				-0.3
5,858,877	-				+0.9
5,858,877	-				+0.2
5,858,877	-				-0.1
5,858,877	-				+0.3
5,858,951	-				-0.5
5,858,994	+				-0.2
5,858,994	+				+0.6
5,859,076	-		PP_5135	0.11	-0.3
5,859,144	+		PP_5135	0.18	+1.2
5,859,144	+		PP_5135	0.18	+0.1
5,859,145	-		PP_5135	0.18	+0.1
5,859,325	+		PP_5135	0.36	+1.4
5,859,384	+		PP_5135	0.41	-0.4
5,859,384	+		PP_5135	0.41	+1.2
5,859,385	-		PP_5135	0.41	+0.8
5,859,385	-		PP_5135	0.41	+1.5
5,859,385	-		PP_5135	0.41	-3.4
5,859,385	-		PP_5135	0.41	-3.0
5,859,417	+		PP_5135	0.45	-0.2
5,859,417	+		PP_5135	0.45	-1.7
5,859,418	-		PP_5135	0.45	+0.1
5,859,519	+		PP_5135	0.54	-0.5
5,859,520	-		PP_5135	0.55	+0.8
5,859,520	-		PP_5135	0.55	+0.4
5,859,690	+		PP_5135	0.71	+0.4
5,859,691	-		PP_5135	0.71	-0.5
5,859,691	-		PP_5135	0.71	+0.7
5,859,803	-		PP_5135	0.82	+0.2
5,859,867	+		PP_5135	0.88	-2.7
5,859,868	-		PP_5135	0.88	+1.9
5,859,901	-				-1.8
5,859,901	-				+0.6
5,859,989	+				-0.7
5,859,990	-				-4.0
5,859,998	+				+1.9
5,859,999	-				+0.1
5,860,194	+		PP_5136	0.11	+1.0
5,860,233	-				+1.1
5,860,242	+		PP_5136	0.14	+1.2
5,860,242	+		PP_5136	0.14	+0.3
5,860,305	+		PP_5136	0.17	-2.7
5,860,398	+		PP_5136	0.23	-0.3
5,860,398	+		PP_5136	0.23	+0.1
5,860,481	+		PP_5136	0.28	+0.6
5,860,481	+		PP_5136	0.28	-3.1
5,860,481	+		PP_5136	0.28	-1.6
5,860,482	-		PP_5136	0.28	+1.6
5,860,482	-		PP_5136	0.28	+0.4
5,860,482	-		PP_5136	0.28	-2.0
5,860,482	-		PP_5136	0.28	-0.1
5,860,486	-		PP_5136	0.28	-0.9
5,860,500	-		PP_5136	0.29	-0.0
5,860,588	-		PP_5136	0.34	+0.8
5,860,649	-		PP_5136	0.37	+0.9
5,860,649	-		PP_5136	0.37	-3.1
5,860,649	-		PP_5136	0.37	+1.5
5,860,649	-		PP_5136	0.37	-0.1
5,860,695	+		PP_5136	0.40	+0.6
5,860,696	-		PP_5136	0.40	+0.1
5,860,722	+		PP_5136	0.42	+0.4
5,860,722	+		PP_5136	0.42	-3.4
5,860,749	+		PP_5136	0.43	-2.1