Strain Fitness in Pseudomonas putida KT2440 around PP_4968

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
5,660,146	-				-0.5
5,660,211	+				+0.3
5,660,294	+				-3.5
5,660,295	-				-1.9
5,660,295	-				-1.5
5,660,295	-				-1.6
5,660,338	-				+0.7
5,660,382	+				+1.3
5,660,383	-				-0.1
5,660,404	+				-1.0
5,660,405	-				-3.9
5,660,405	-				-3.5
5,660,520	+				+1.4
5,660,520	+				-0.7
5,660,520	+				-1.4
5,660,536	+				+1.4
5,660,536	+				+0.1
5,660,537	-				-1.4
5,660,560	-		PP_4968	0.11	+1.4
5,660,779	-		PP_4968	0.24	+0.5
5,660,824	+		PP_4968	0.26	-3.5
5,660,824	+		PP_4968	0.26	-0.7
5,660,824	+		PP_4968	0.26	+1.1
5,660,824	+		PP_4968	0.26	+0.4
5,660,919	+		PP_4968	0.32	-0.1
5,660,919	+		PP_4968	0.32	-2.0
5,660,920	-		PP_4968	0.32	-1.9
5,660,920	-		PP_4968	0.32	-2.0
5,661,127	-		PP_4968	0.44	+2.6
5,661,271	-		PP_4968	0.53	+1.6
5,661,291	+		PP_4968	0.54	+0.1
5,661,291	+		PP_4968	0.54	+0.8
5,661,291	+		PP_4968	0.54	+0.9
5,661,292	-		PP_4968	0.54	-0.3
5,661,292	-		PP_4968	0.54	+1.2
5,661,292	-		PP_4968	0.54	-0.4
5,661,297	+		PP_4968	0.54	+0.9
5,661,298	-		PP_4968	0.54	+1.7
5,661,648	-		PP_4968	0.75	-0.3
5,661,648	-		PP_4968	0.75	+2.7
5,661,715	+		PP_4968	0.79	+0.9
5,661,716	-		PP_4968	0.79	+0.5
5,662,036	+				+0.9
5,662,036	+				-1.4
5,662,037	-				+0.9
5,662,037	-				+0.7
5,662,089	+				-3.6
5,662,090	-				+0.2
5,662,090	-				+0.3
5,662,090	-				-0.5
5,662,142	-				+0.4
5,662,142	-				-0.4
5,662,195	+				-0.9