Strain Fitness in Pseudomonas putida KT2440 around PP_4795

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4794 and PP_4795 are separated by 61 nucleotidesPP_4795 and PP_4796 are separated by 39 nucleotides PP_4794: PP_4794 - Leucine--tRNA ligase, at 5,456,269 to 5,458,875 _4794 PP_4795: PP_4795 - putative Lipoprotein, at 5,458,937 to 5,459,542 _4795 PP_4796: PP_4796 - DNA polymerase III, delta subunit, at 5,459,582 to 5,460,619 _4796 Position (kb) 5458 5459 5460Strain fitness (log2 ratio) -1 0 1at 5459.437 kb on + strand, within PP_4795at 5459.529 kb on + strandat 5459.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
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5,459,437 + PP_4795 0.83 +0.7
5,459,529 + +0.8
5,459,540 + +0.1

Or see this region's nucleotide sequence