Strain Fitness in Pseudomonas putida KT2440 around PP_4742

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
5,396,015	+		PP_4741	0.33	+0.6
5,396,015	+		PP_4741	0.33	-1.6
5,396,015	+		PP_4741	0.33	+0.3
5,396,016	-		PP_4741	0.34	+1.2
5,396,016	-		PP_4741	0.34	+2.2
5,396,016	-		PP_4741	0.34	-4.0
5,396,144	+		PP_4741	0.42	-1.7
5,396,145	-		PP_4741	0.42	-0.2
5,396,145	-		PP_4741	0.42	-0.8
5,396,145	-		PP_4741	0.42	-0.5
5,396,149	-		PP_4741	0.43	-1.4
5,396,149	-		PP_4741	0.43	+0.9
5,396,149	-		PP_4741	0.43	+0.5
5,396,335	+		PP_4741	0.55	+0.4
5,396,336	-		PP_4741	0.55	+0.1
5,396,336	-		PP_4741	0.55	-4.1
5,396,336	-		PP_4741	0.55	+0.3
5,396,436	+		PP_4741	0.62	-1.1
5,396,437	-		PP_4741	0.62	-0.7
5,396,443	+		PP_4741	0.63	+1.1
5,396,480	+		PP_4741	0.65	-0.5
5,396,482	-		PP_4741	0.65	+0.6
5,396,664	-		PP_4741	0.78	+3.2
5,396,898	+				-1.8
5,396,898	+				-1.7
5,396,898	+				+0.3
5,396,898	+				+0.2
5,396,899	-				-2.2
5,396,909	+				+2.1
5,396,910	-				-1.5
5,396,910	-				-1.9
5,396,910	-				-1.9
5,396,910	-				-3.7
5,396,910	-				-0.4
5,396,940	+				+2.3
5,396,961	+				+1.0
5,396,989	-				-3.8
5,396,999	+				+1.2
5,397,088	-				-0.7
5,397,108	+				-0.5
5,397,209	+		PP_4742	0.13	+0.1
5,397,240	-		PP_4742	0.15	+0.6
5,397,240	-		PP_4742	0.15	+1.1
5,397,329	+		PP_4742	0.20	-1.2
5,397,387	+		PP_4742	0.23	-0.5
5,397,387	+		PP_4742	0.23	-2.7
5,397,582	-		PP_4742	0.34	-0.1
5,397,656	+		PP_4742	0.39	-1.8
5,397,740	+		PP_4742	0.43	-0.0
5,397,749	+		PP_4742	0.44	-1.0
5,397,749	+		PP_4742	0.44	+1.0
5,397,981	+		PP_4742	0.57	-0.7
5,398,145	+		PP_4742	0.67	-2.4
5,398,145	+		PP_4742	0.67	+1.9
5,398,146	-		PP_4742	0.67	+1.6
5,398,192	-		PP_4742	0.69	-0.0
5,398,256	+		PP_4742	0.73	+0.4
5,398,277	+		PP_4742	0.74	-4.6
5,398,277	+		PP_4742	0.74	+0.3
5,398,278	-		PP_4742	0.74	+2.3
5,398,326	+		PP_4742	0.77	+1.8
5,398,328	+		PP_4742	0.77	+2.6
5,398,329	-		PP_4742	0.77	+0.1
5,398,332	-		PP_4742	0.78	+0.7
5,398,400	+		PP_4742	0.82	+0.2
5,398,498	+		PP_4742	0.87	+1.6
5,398,499	-		PP_4742	0.87	+1.7
5,398,542	+		PP_4742	0.90	+1.8
5,398,650	-				-0.3
5,398,661	+				-0.0
5,398,760	+				-1.2
5,398,816	-		PP_5711	0.20	-0.3
5,398,872	+		PP_5711	0.33	-0.5
5,398,873	-		PP_5711	0.33	+0.7
5,398,886	+		PP_5711	0.36	+1.2
5,398,933	+		PP_5711	0.47	-1.4
5,398,966	+		PP_5711	0.55	-0.5
5,399,156	+				+0.5
5,399,161	-				-1.3
5,399,323	-				+0.9
5,399,410	-		PP_4743	0.15	+0.6