Strain Fitness in Pseudomonas putida KT2440 around PP_4670

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
5,295,122	+		PP_4668	0.63	+0.9
5,295,122	+		PP_4668	0.63	+0.7
5,295,123	-		PP_4668	0.64	+0.8
5,295,123	-		PP_4668	0.64	+0.6
5,295,159	-		PP_4668	0.67	+0.6
5,295,255	+		PP_4668	0.77	+1.1
5,295,255	+		PP_4668	0.77	+0.2
5,295,341	+		PP_4668	0.86	+0.6
5,295,341	+		PP_4668	0.86	-0.7
5,295,341	+		PP_4668	0.86	+1.4
5,295,342	-		PP_4668	0.87	+0.1
5,295,342	-		PP_4668	0.87	-1.0
5,295,393	-				+0.6
5,295,498	+				+1.4
5,295,499	-				-3.5
5,295,561	-				+0.9
5,295,570	+				+0.4
5,295,570	+				-0.4
5,295,571	-				+1.5
5,295,600	-				-2.0
5,295,776	+		PP_4669	0.35	-0.2
5,295,776	+		PP_4669	0.35	-2.6
5,295,776	+		PP_4669	0.35	-0.4
5,295,777	-		PP_4669	0.35	-1.9
5,296,073	-				+1.8
5,296,073	-				+1.0
5,296,073	-				-1.0
5,296,173	+				+1.1
5,296,173	+				+0.8
5,296,173	+				+0.3
5,296,230	+		PP_4670	0.11	+0.9
5,296,233	+		PP_4670	0.11	+0.9
5,296,234	-		PP_4670	0.11	+1.0
5,296,240	+		PP_4670	0.12	+1.0
5,296,346	-		PP_4670	0.20	+1.6
5,296,448	+		PP_4670	0.28	+1.9
5,296,448	+		PP_4670	0.28	+0.6
5,296,448	+		PP_4670	0.28	-0.8
5,296,448	+		PP_4670	0.28	+2.0
5,296,448	+		PP_4670	0.28	-0.4
5,296,449	-		PP_4670	0.28	+1.6
5,296,449	-		PP_4670	0.28	+0.5
5,296,660	+		PP_4670	0.45	+0.6
5,296,661	-		PP_4670	0.45	+0.2
5,296,814	-		PP_4670	0.57	-0.4
5,296,839	+		PP_4670	0.59	+1.9
5,296,938	-		PP_4670	0.67	-0.2
5,296,940	-		PP_4670	0.67	-2.8
5,296,940	-		PP_4670	0.67	-0.5
5,297,174	+		PP_4670	0.85	+1.3
5,297,174	+		PP_4670	0.85	+1.2
5,297,174	+		PP_4670	0.85	+0.8
5,297,175	-		PP_4670	0.85	-1.6
5,297,175	-		PP_4670	0.85	+1.6
5,297,175	-		PP_4670	0.85	-0.4
5,297,175	-		PP_4670	0.85	+1.7
5,297,181	+		PP_4670	0.86	-0.4
5,297,182	-		PP_4670	0.86	+1.4
5,297,182	-		PP_4670	0.86	+1.4
5,297,182	-		PP_4670	0.86	+0.0
5,297,212	+		PP_4670	0.88	+1.4
5,297,223	+		PP_4670	0.89	+1.7
5,297,223	+		PP_4670	0.89	+0.4
5,297,224	-		PP_4670	0.89	+1.9
5,297,548	-		PP_4671	0.33	+0.6
5,297,548	-		PP_4671	0.33	-0.0
5,297,594	+		PP_4671	0.41	+0.4
5,297,594	+		PP_4671	0.41	+0.9
5,297,703	-		PP_4671	0.61	-4.5
5,297,703	-		PP_4671	0.61	-2.8
5,297,731	+		PP_4671	0.66	-0.9
5,297,731	+		PP_4671	0.66	-2.4
5,297,731	+		PP_4671	0.66	+0.4
5,297,762	+		PP_4671	0.71	-1.6
5,297,763	-		PP_4671	0.71	-3.0
5,297,772	+		PP_4671	0.73	+0.9
5,297,779	+		PP_4671	0.74	+0.8
5,297,779	+		PP_4671	0.74	-0.6
5,297,780	-		PP_4671	0.74	-0.6
5,297,780	-		PP_4671	0.74	-2.8
5,297,780	-		PP_4671	0.74	-1.4
5,297,782	+		PP_4671	0.75	+0.4
5,297,782	+		PP_4671	0.75	+0.2
5,297,782	+		PP_4671	0.75	+1.0
5,297,782	+		PP_4671	0.75	+0.7
5,297,940	+				+1.5
5,297,941	-				-1.4
5,297,968	+				+2.3
5,297,968	+				-0.3
5,297,969	-				+0.2
5,297,984	+				-2.3
5,297,984	+				+0.7
5,297,985	-				+1.9
5,297,985	-				-0.6
5,297,989	+				+0.9
5,297,989	+				+0.7
5,297,989	+				+1.2
5,297,990	-				+0.6
5,297,990	-				+0.3
5,298,009	+				+0.5
5,298,009	+				-2.3
5,298,009	+				+0.2
5,298,010	-				-0.8
5,298,010	-				-0.1
5,298,027	+				+1.2
5,298,055	+				+1.9
5,298,056	-				-0.8
5,298,062	+				-1.3
5,298,063	-				+1.0