Strain Fitness in Pseudomonas putida KT2440 around PP_4602

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
5,220,767	+				-0.4
5,220,767	+				+1.3
5,220,768	-				-0.3
5,220,768	-				-3.2
5,220,799	-				+0.5
5,220,826	+				-0.2
5,220,826	+				+0.6
5,220,827	-				+1.9
5,220,842	+				+1.3
5,220,843	-				+0.1
5,220,854	-				+0.1
5,220,952	+				-2.1
5,220,952	+				-3.5
5,220,952	+				+1.3
5,220,952	+				-2.0
5,220,953	-				+0.9
5,221,303	+		PP_4601	0.48	+1.3
5,221,304	-		PP_4601	0.48	+2.2
5,221,304	-		PP_4601	0.48	-1.8
5,221,311	-		PP_4601	0.49	+0.5
5,221,473	-		PP_4601	0.67	-0.0
5,221,556	-		PP_4601	0.77	-2.2
5,221,578	+		PP_4601	0.79	+1.1
5,221,578	+		PP_4601	0.79	+1.0
5,221,578	+		PP_4601	0.79	+1.8
5,221,578	+		PP_4601	0.79	-0.3
5,221,578	+		PP_4601	0.79	+0.7
5,221,579	-		PP_4601	0.79	-0.8
5,221,579	-		PP_4601	0.79	+1.1
5,221,579	-		PP_4601	0.79	-2.7
5,221,642	-		PP_4601	0.86	-0.2
5,221,782	-				+0.5
5,221,795	-				-1.0
5,221,844	+		PP_4602	0.11	-2.4
5,221,845	-		PP_4602	0.11	-1.1
5,221,964	+		PP_4602	0.25	-1.5
5,221,964	+		PP_4602	0.25	-2.8
5,221,964	+		PP_4602	0.25	+0.0
5,221,989	+		PP_4602	0.28	+1.9
5,222,075	+		PP_4602	0.39	-0.1
5,222,076	-		PP_4602	0.39	-2.7
5,222,154	-		PP_4602	0.48	-0.2
5,222,154	-		PP_4602	0.48	-3.8
5,222,201	+		PP_4602	0.54	-2.6
5,222,268	+		PP_4602	0.62	+0.7
5,222,269	-		PP_4602	0.62	-2.4
5,222,378	+		PP_4602	0.75	-2.5
5,222,504	+		PP_4602	0.90	-4.1