Strain Fitness in Pseudomonas putida KT2440 around PP_4306

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
4,896,646	+				-0.1
4,896,647	-				-0.6
4,896,666	-				-0.4
4,896,686	+		PP_4305	0.11	+0.1
4,896,686	+		PP_4305	0.11	-2.1
4,896,686	+		PP_4305	0.11	-0.7
4,896,687	-		PP_4305	0.11	+0.8
4,896,687	-		PP_4305	0.11	-2.9
4,896,695	+		PP_4305	0.12	-1.6
4,896,695	+		PP_4305	0.12	-2.1
4,896,695	+		PP_4305	0.12	+0.5
4,896,695	+		PP_4305	0.12	-0.1
4,896,696	-		PP_4305	0.12	-0.3
4,897,043	+		PP_4305	0.47	-0.1
4,897,043	+		PP_4305	0.47	-0.6
4,897,044	-		PP_4305	0.47	-0.6
4,897,044	-		PP_4305	0.47	-3.4
4,897,045	+		PP_4305	0.47	+1.3
4,897,045	+		PP_4305	0.47	-2.3
4,897,045	+		PP_4305	0.47	-1.0
4,897,045	+		PP_4305	0.47	-1.6
4,897,045	+		PP_4305	0.47	-0.2
4,897,045	+		PP_4305	0.47	-3.4
4,897,045	+		PP_4305	0.47	+0.3
4,897,045	+		PP_4305	0.47	-0.9
4,897,045	+		PP_4305	0.47	-0.8
4,897,045	+		PP_4305	0.47	+0.8
4,897,046	-		PP_4305	0.47	+0.9
4,897,046	-		PP_4305	0.47	-1.5
4,897,046	-		PP_4305	0.47	+0.1
4,897,046	-		PP_4305	0.47	-2.2
4,897,049	+		PP_4305	0.47	-0.0
4,897,049	+		PP_4305	0.47	+0.1
4,897,050	-		PP_4305	0.48	-0.7
4,897,050	-		PP_4305	0.48	+1.4
4,897,068	-		PP_4305	0.49	-1.0
4,897,071	+		PP_4305	0.50	+0.6
4,897,071	+		PP_4305	0.50	+0.9
4,897,071	+		PP_4305	0.50	+1.7
4,897,071	+		PP_4305	0.50	-0.5
4,897,072	-		PP_4305	0.50	-2.9
4,897,072	-		PP_4305	0.50	+2.3
4,897,281	+		PP_4305	0.71	+0.3
4,897,282	-		PP_4305	0.71	+0.3
4,897,323	+		PP_4305	0.75	-2.4
4,897,323	+		PP_4305	0.75	-2.9
4,897,324	-		PP_4305	0.75	-3.2
4,897,362	-		PP_4305	0.79	+0.5
4,897,362	-		PP_4305	0.79	+0.5
4,897,370	+		PP_4305	0.80	-3.1
4,897,370	+		PP_4305	0.80	-2.6
4,897,371	-		PP_4305	0.80	+1.4
4,897,371	-		PP_4305	0.80	+1.3
4,897,412	+		PP_4305	0.84	-0.3
4,897,412	+		PP_4305	0.84	+2.1
4,897,449	-		PP_4305	0.87	-2.9
4,897,510	+				+1.3
4,897,559	+				+0.6
4,897,559	+				+1.5
4,897,559	+				-0.2
4,897,559	+				-2.1
4,897,559	+				-0.2
4,897,560	-				-2.2
4,897,560	-				+0.9
4,897,560	-				-1.3
4,897,560	-				-0.6
4,897,560	-				-2.9
4,897,673	-				-0.3
4,897,673	-				+1.6
4,897,673	-				-0.2
4,897,673	-				+1.0
4,897,805	-		PP_4306	0.23	-3.3
4,897,868	-		PP_4306	0.29	-2.0
4,897,868	-		PP_4306	0.29	-0.3
4,897,876	+		PP_4306	0.30	+0.6
4,897,877	-		PP_4306	0.30	+0.2
4,897,921	+		PP_4306	0.35	+0.4
4,898,054	+		PP_4306	0.49	-3.0
4,898,054	+		PP_4306	0.49	-1.2
4,898,055	-		PP_4306	0.49	-2.1
4,898,055	-		PP_4306	0.49	-1.3
4,898,055	-		PP_4306	0.49	-0.4
4,898,055	-		PP_4306	0.49	-1.5
4,898,170	+		PP_4306	0.61	-0.6
4,898,170	+		PP_4306	0.61	-4.2
4,898,248	+		PP_4306	0.69	+0.4
4,898,546	+				-1.4
4,898,547	-				+0.6
4,898,785	+		PP_4307	0.26	+0.3
4,898,785	+		PP_4307	0.26	-0.4
4,898,785	+		PP_4307	0.26	-4.6
4,898,785	+		PP_4307	0.26	-2.2
4,898,785	+		PP_4307	0.26	-0.2
4,898,785	+		PP_4307	0.26	-1.9
4,898,786	-		PP_4307	0.26	+1.0
4,898,786	-		PP_4307	0.26	-3.7
4,898,786	-		PP_4307	0.26	-0.3
4,898,786	-		PP_4307	0.26	+0.4
4,898,786	-		PP_4307	0.26	+0.8
4,898,786	-		PP_4307	0.26	-0.8
4,898,786	-		PP_4307	0.26	+0.1
4,898,786	-		PP_4307	0.26	+0.9
4,898,786	-		PP_4307	0.26	-0.3
4,898,789	+		PP_4307	0.26	-1.1
4,898,789	+		PP_4307	0.26	-0.0
4,898,789	+		PP_4307	0.26	+0.8
4,898,789	+		PP_4307	0.26	-1.0
4,898,789	+		PP_4307	0.26	-0.1
4,898,789	+		PP_4307	0.26	-1.4
4,898,789	+		PP_4307	0.26	-1.0
4,898,789	+		PP_4307	0.26	-0.7
4,898,789	+		PP_4307	0.26	+1.4
4,898,789	+		PP_4307	0.26	-1.2
4,898,790	-		PP_4307	0.27	+0.3
4,898,790	-		PP_4307	0.27	-1.1
4,898,790	-		PP_4307	0.27	-0.6
4,898,790	-		PP_4307	0.27	-0.3
4,898,790	-		PP_4307	0.27	+0.7
4,898,790	-		PP_4307	0.27	+0.8
4,898,790	-		PP_4307	0.27	+0.6
4,898,790	-		PP_4307	0.27	-2.5
4,898,790	-		PP_4307	0.27	-1.4
4,898,790	-		PP_4307	0.27	-1.1
4,898,812	-		PP_4307	0.29	+0.8
4,899,014	+		PP_4307	0.51	-0.1
4,899,014	+		PP_4307	0.51	-0.7
4,899,015	-		PP_4307	0.51	+0.3
4,899,015	-		PP_4307	0.51	+0.7
4,899,027	+		PP_4307	0.52	+1.3
4,899,028	-		PP_4307	0.52	+0.3
4,899,028	-		PP_4307	0.52	-1.4
4,899,167	+		PP_4307	0.67	+0.7
4,899,167	+		PP_4307	0.67	+0.9
4,899,168	-		PP_4307	0.67	-1.2
4,899,168	-		PP_4307	0.67	-3.0
4,899,203	+		PP_4307	0.71	-2.5
4,899,203	+		PP_4307	0.71	-2.2
4,899,204	-		PP_4307	0.71	+0.7
4,899,344	-		PP_4307	0.86	-0.1
4,899,344	-		PP_4307	0.86	-0.3
4,899,499	-				+2.8