Strain Fitness in Pseudomonas putida KT2440 around PP_4305

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
4,895,702	+		PP_4304	0.19	+0.9
4,895,759	+		PP_4304	0.26	-1.6
4,895,759	+		PP_4304	0.26	-0.0
4,895,759	+		PP_4304	0.26	+0.7
4,895,760	-		PP_4304	0.26	-0.9
4,895,760	-		PP_4304	0.26	-2.8
4,895,760	-		PP_4304	0.26	+1.6
4,895,760	-		PP_4304	0.26	-0.8
4,895,760	-		PP_4304	0.26	+2.3
4,895,760	-		PP_4304	0.26	+0.1
4,895,760	-		PP_4304	0.26	+1.3
4,895,774	+		PP_4304	0.28	+0.7
4,895,774	+		PP_4304	0.28	+0.3
4,895,775	-		PP_4304	0.28	+0.4
4,895,799	-		PP_4304	0.31	+0.8
4,895,813	+		PP_4304	0.32	-0.0
4,895,814	-		PP_4304	0.33	-0.6
4,895,861	+		PP_4304	0.38	+0.4
4,895,865	-		PP_4304	0.39	+1.0
4,895,865	-		PP_4304	0.39	-2.0
4,895,865	-		PP_4304	0.39	+0.6
4,895,865	-		PP_4304	0.39	-0.7
4,895,880	-		PP_4304	0.41	+1.5
4,895,926	-		PP_4304	0.46	-1.9
4,895,926	-		PP_4304	0.46	-0.6
4,895,961	-		PP_4304	0.50	-2.0
4,895,961	-		PP_4304	0.50	+1.2
4,896,053	+		PP_4304	0.62	+0.4
4,896,054	-		PP_4304	0.62	+0.2
4,896,082	+		PP_4304	0.65	+0.7
4,896,104	+		PP_4304	0.68	-3.0
4,896,104	+		PP_4304	0.68	-0.4
4,896,104	+		PP_4304	0.68	-0.1
4,896,105	-		PP_4304	0.68	-1.5
4,896,105	-		PP_4304	0.68	-3.7
4,896,105	-		PP_4304	0.68	+0.5
4,896,203	+		PP_4304	0.80	+0.5
4,896,235	+		PP_4304	0.84	+1.2
4,896,369	-				-1.1
4,896,395	+				-1.3
4,896,407	+				+0.7
4,896,408	-				+0.2
4,896,408	-				+1.2
4,896,480	+				+0.1
4,896,510	+				+0.8
4,896,511	-				+1.4
4,896,511	-				-2.0
4,896,513	-				-0.4
4,896,513	-				+1.0
4,896,527	+				+1.0
4,896,646	+				-0.1
4,896,647	-				-0.6
4,896,666	-				-0.4
4,896,686	+		PP_4305	0.11	+0.1
4,896,686	+		PP_4305	0.11	-2.1
4,896,686	+		PP_4305	0.11	-0.7
4,896,687	-		PP_4305	0.11	+0.8
4,896,687	-		PP_4305	0.11	-2.9
4,896,695	+		PP_4305	0.12	-1.6
4,896,695	+		PP_4305	0.12	-2.1
4,896,695	+		PP_4305	0.12	+0.5
4,896,695	+		PP_4305	0.12	-0.1
4,896,696	-		PP_4305	0.12	-0.3
4,897,043	+		PP_4305	0.47	-0.1
4,897,043	+		PP_4305	0.47	-0.6
4,897,044	-		PP_4305	0.47	-0.6
4,897,044	-		PP_4305	0.47	-3.4
4,897,045	+		PP_4305	0.47	+1.3
4,897,045	+		PP_4305	0.47	-2.3
4,897,045	+		PP_4305	0.47	-1.0
4,897,045	+		PP_4305	0.47	-1.6
4,897,045	+		PP_4305	0.47	-0.2
4,897,045	+		PP_4305	0.47	-3.4
4,897,045	+		PP_4305	0.47	+0.3
4,897,045	+		PP_4305	0.47	-0.9
4,897,045	+		PP_4305	0.47	-0.8
4,897,045	+		PP_4305	0.47	+0.8
4,897,046	-		PP_4305	0.47	+0.9
4,897,046	-		PP_4305	0.47	-1.5
4,897,046	-		PP_4305	0.47	+0.1
4,897,046	-		PP_4305	0.47	-2.2
4,897,049	+		PP_4305	0.47	-0.0
4,897,049	+		PP_4305	0.47	+0.1
4,897,050	-		PP_4305	0.48	-0.7
4,897,050	-		PP_4305	0.48	+1.4
4,897,068	-		PP_4305	0.49	-1.0
4,897,071	+		PP_4305	0.50	+0.6
4,897,071	+		PP_4305	0.50	+0.9
4,897,071	+		PP_4305	0.50	+1.7
4,897,071	+		PP_4305	0.50	-0.5
4,897,072	-		PP_4305	0.50	-2.9
4,897,072	-		PP_4305	0.50	+2.3
4,897,281	+		PP_4305	0.71	+0.3
4,897,282	-		PP_4305	0.71	+0.3
4,897,323	+		PP_4305	0.75	-2.4
4,897,323	+		PP_4305	0.75	-2.9
4,897,324	-		PP_4305	0.75	-3.2
4,897,362	-		PP_4305	0.79	+0.5
4,897,362	-		PP_4305	0.79	+0.5
4,897,370	+		PP_4305	0.80	-3.1
4,897,370	+		PP_4305	0.80	-2.6
4,897,371	-		PP_4305	0.80	+1.4
4,897,371	-		PP_4305	0.80	+1.3
4,897,412	+		PP_4305	0.84	-0.3
4,897,412	+		PP_4305	0.84	+2.1
4,897,449	-		PP_4305	0.87	-2.9
4,897,510	+				+1.3
4,897,559	+				+0.6
4,897,559	+				+1.5
4,897,559	+				-0.2
4,897,559	+				-2.1
4,897,559	+				-0.2
4,897,560	-				-2.2
4,897,560	-				+0.9
4,897,560	-				-1.3
4,897,560	-				-0.6
4,897,560	-				-2.9
4,897,673	-				-0.3
4,897,673	-				+1.6
4,897,673	-				-0.2
4,897,673	-				+1.0
4,897,805	-		PP_4306	0.23	-3.3
4,897,868	-		PP_4306	0.29	-2.0
4,897,868	-		PP_4306	0.29	-0.3
4,897,876	+		PP_4306	0.30	+0.6
4,897,877	-		PP_4306	0.30	+0.2
4,897,921	+		PP_4306	0.35	+0.4
4,898,054	+		PP_4306	0.49	-3.0
4,898,054	+		PP_4306	0.49	-1.2
4,898,055	-		PP_4306	0.49	-2.1
4,898,055	-		PP_4306	0.49	-1.3
4,898,055	-		PP_4306	0.49	-0.4
4,898,055	-		PP_4306	0.49	-1.5
4,898,170	+		PP_4306	0.61	-0.6
4,898,170	+		PP_4306	0.61	-4.2
4,898,248	+		PP_4306	0.69	+0.4
4,898,546	+				-1.4
4,898,547	-				+0.6