Experiment: 3-methyl-1-butanol 0.25 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4221 and PP_4222 are separated by 155 nucleotides PP_4222 and PP_4223 are separated by 105 nucleotides
PP_4221: PP_4221 - non-ribosomal peptide synthetase (subunit of ferribactin synthase), at 4,787,315 to 4,793,839
_4221
PP_4222: PP_4222 - putative SyrP protein, at 4,793,995 to 4,794,978
_4222
PP_4223: PP_4223 - diaminobutyrate-2-oxoglutarate transaminase, at 4,795,084 to 4,796,442
_4223
Position (kb) 4793
4794
4795 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4793.115 kb on + strand, within PP_4221 at 4793.235 kb on + strand at 4793.264 kb on - strand at 4793.290 kb on + strand at 4793.290 kb on + strand at 4793.291 kb on - strand at 4793.291 kb on - strand at 4793.291 kb on - strand at 4793.625 kb on + strand at 4793.626 kb on - strand at 4793.626 kb on - strand at 4793.679 kb on + strand at 4793.679 kb on + strand at 4793.679 kb on + strand at 4793.680 kb on - strand at 4793.852 kb on + strand at 4793.853 kb on - strand at 4794.200 kb on + strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.266 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.422 kb on - strand, within PP_4222 at 4794.479 kb on + strand at 4794.480 kb on - strand, within PP_4222 at 4794.491 kb on + strand, within PP_4222 at 4794.491 kb on + strand, within PP_4222 at 4794.492 kb on - strand, within PP_4222 at 4794.523 kb on + strand, within PP_4222 at 4794.523 kb on + strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.638 kb on + strand, within PP_4222 at 4794.638 kb on + strand, within PP_4222 at 4794.681 kb on - strand, within PP_4222 at 4794.695 kb on + strand, within PP_4222 at 4794.695 kb on + strand, within PP_4222 at 4794.696 kb on - strand, within PP_4222 at 4794.696 kb on - strand, within PP_4222 at 4794.740 kb on + strand, within PP_4222 at 4794.923 kb on - strand at 4794.970 kb on + strand at 4794.970 kb on + strand at 4794.970 kb on + strand at 4794.971 kb on - strand at 4794.971 kb on - strand at 4794.971 kb on - strand at 4795.096 kb on + strand at 4795.887 kb on - strand, within PP_4223 at 4795.893 kb on - strand, within PP_4223
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C) remove 4,793,115 + PP_4221 0.89 +0.4 4,793,235 + -0.0 4,793,264 - +1.5 4,793,290 + -2.4 4,793,290 + -2.4 4,793,291 - -0.6 4,793,291 - -2.3 4,793,291 - +0.0 4,793,625 + +1.2 4,793,626 - -0.0 4,793,626 - +0.4 4,793,679 + -3.1 4,793,679 + -3.4 4,793,679 + -1.4 4,793,680 - +0.5 4,793,852 + +0.1 4,793,853 - -4.1 4,794,200 + PP_4222 0.21 +0.2 4,794,201 - PP_4222 0.21 -0.6 4,794,201 - PP_4222 0.21 -0.2 4,794,201 - PP_4222 0.21 -2.8 4,794,266 - PP_4222 0.28 -1.3 4,794,305 - PP_4222 0.32 -0.3 4,794,305 - PP_4222 0.32 -1.3 4,794,305 - PP_4222 0.32 -1.1 4,794,410 + PP_4222 0.42 -1.2 4,794,410 + PP_4222 0.42 -0.4 4,794,410 + PP_4222 0.42 +1.3 4,794,422 - PP_4222 0.43 -0.5 4,794,479 + -0.9 4,794,480 - PP_4222 0.49 -0.4 4,794,491 + PP_4222 0.50 +0.2 4,794,491 + PP_4222 0.50 -0.9 4,794,492 - PP_4222 0.51 -0.6 4,794,523 + PP_4222 0.54 -0.6 4,794,523 + PP_4222 0.54 +0.1 4,794,606 - PP_4222 0.62 +0.4 4,794,606 - PP_4222 0.62 -3.5 4,794,606 - PP_4222 0.62 +0.8 4,794,606 - PP_4222 0.62 -1.4 4,794,638 + PP_4222 0.65 -3.3 4,794,638 + PP_4222 0.65 +0.6 4,794,681 - PP_4222 0.70 -1.4 4,794,695 + PP_4222 0.71 +0.7 4,794,695 + PP_4222 0.71 -0.9 4,794,696 - PP_4222 0.71 +0.3 4,794,696 - PP_4222 0.71 -2.5 4,794,740 + PP_4222 0.76 -0.6 4,794,923 - +0.5 4,794,970 + -0.3 4,794,970 + -1.1 4,794,970 + +1.6 4,794,971 - +0.7 4,794,971 - +0.8 4,794,971 - -3.6 4,795,096 + -3.0 4,795,887 - PP_4223 0.59 +0.9 4,795,893 - PP_4223 0.60 -0.9
Or see this region's nucleotide sequence