Strain Fitness in Pseudomonas putida KT2440 around PP_3988

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
4,496,962	+		PP_5651	0.21	-1.2
4,496,962	+		PP_5651	0.21	+0.8
4,497,062	-		PP_5651	0.29	+0.5
4,497,082	+		PP_5651	0.30	+1.4
4,497,102	-		PP_5651	0.32	+0.7
4,497,145	+		PP_5651	0.35	+0.7
4,497,327	-		PP_5651	0.50	-0.3
4,497,400	+		PP_5651	0.56	-2.7
4,497,455	+		PP_5651	0.60	+0.1
4,497,456	-		PP_5651	0.60	+0.8
4,497,508	+		PP_5651	0.65	+0.5
4,497,726	-		PP_5651	0.82	+0.8
4,497,726	-		PP_5651	0.82	-1.4
4,497,730	-		PP_5651	0.82	-0.0
4,497,772	+		PP_5651	0.86	+1.2
4,497,773	-		PP_5651	0.86	+1.1
4,497,776	-		PP_5651	0.86	-0.2
4,497,900	-				-3.5
4,497,949	+				+1.0
4,498,050	+				+1.4
4,498,125	+				+0.7
4,498,231	+		PP_3988	0.13	-2.1
4,498,270	+		PP_3988	0.15	+0.0
4,498,515	+		PP_3988	0.27	-3.1
4,498,515	+		PP_3988	0.27	-2.5
4,498,678	+		PP_3988	0.35	-1.3
4,498,725	+		PP_3988	0.38	-0.8
4,498,725	+		PP_3988	0.38	-0.7
4,498,962	+		PP_3988	0.49	-0.6
4,498,963	-		PP_3988	0.49	+0.7
4,499,008	+		PP_3988	0.51	+0.2
4,499,015	+		PP_3988	0.52	-1.3
4,499,015	+		PP_3988	0.52	-2.0
4,499,037	+		PP_3988	0.53	-0.3
4,499,121	+		PP_3988	0.57	-0.0
4,499,121	+		PP_3988	0.57	-0.2
4,499,128	-		PP_3988	0.57	-0.0
4,499,213	-		PP_3988	0.61	-2.6
4,499,674	+		PP_3988	0.84	-1.4
4,499,721	+		PP_3988	0.86	+0.4
4,499,908	+				+1.6
4,500,005	+				+2.0
4,500,119	+				-3.4
4,500,173	+		PP_3989	0.15	+0.6
4,500,302	+		PP_3989	0.27	+0.8
4,500,679	+		PP_3989	0.63	-2.1
4,500,725	+				+2.4
4,500,762	+		PP_3989	0.71	-1.5
4,500,814	+		PP_3989	0.76	-0.9
4,500,814	+		PP_3989	0.76	+0.4
4,500,814	+		PP_3989	0.76	-1.0
4,500,837	+		PP_3989	0.79	+0.1
4,500,837	+		PP_3989	0.79	-4.6
4,500,883	+		PP_3989	0.83	+0.8