Strain Fitness in Pseudomonas putida KT2440 around PP_3738

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
4,264,801	+				-0.1
4,264,807	+				+0.2
4,264,833	-				+0.2
4,264,833	-				+1.4
4,264,935	+		PP_3737	0.15	+1.0
4,264,935	+		PP_3737	0.15	+0.9
4,264,935	+		PP_3737	0.15	+0.6
4,264,971	+		PP_3737	0.19	-0.2
4,264,972	-		PP_3737	0.19	-0.4
4,265,057	+		PP_3737	0.28	-1.9
4,265,196	+		PP_3737	0.43	+0.4
4,265,196	+		PP_3737	0.43	-3.6
4,265,196	+		PP_3737	0.43	-2.3
4,265,197	-		PP_3737	0.43	-0.6
4,265,197	-		PP_3737	0.43	+1.2
4,265,197	-		PP_3737	0.43	-0.5
4,265,197	-		PP_3737	0.43	+1.6
4,265,349	+		PP_3737	0.59	+0.4
4,265,349	+		PP_3737	0.59	-2.9
4,265,349	+		PP_3737	0.59	+0.4
4,265,349	+		PP_3737	0.59	+0.5
4,265,349	+		PP_3737	0.59	-2.8
4,265,350	-		PP_3737	0.59	-1.9
4,265,350	-		PP_3737	0.59	+1.8
4,265,350	-		PP_3737	0.59	-0.7
4,265,350	-		PP_3737	0.59	-1.1
4,265,350	-		PP_3737	0.59	+0.1
4,265,350	-		PP_3737	0.59	-0.6
4,265,350	-		PP_3737	0.59	+1.1
4,265,353	+		PP_3737	0.59	+0.5
4,265,353	+		PP_3737	0.59	-2.9
4,265,353	+		PP_3737	0.59	-2.3
4,265,354	-		PP_3737	0.60	+0.2
4,265,561	+		PP_3737	0.81	-0.3
4,265,562	-		PP_3737	0.81	+0.6
4,265,810	-				-3.5
4,265,903	+		PP_3738	0.22	-1.4
4,265,903	+		PP_3738	0.22	-1.1
4,265,904	-		PP_3738	0.22	-0.2
4,265,904	-		PP_3738	0.22	-4.0
4,266,073	+		PP_3738	0.46	-1.8
4,266,074	-		PP_3738	0.46	-1.2
4,266,492	+				-1.1
4,266,526	+				+0.9
4,266,526	+				+1.0
4,266,526	+				+0.8
4,266,526	+				-0.2
4,266,527	-				-1.0
4,266,605	+				-0.2
4,266,621	-				-1.8
4,266,621	-				-0.6
4,266,728	+				+1.3
4,266,728	+				+0.8
4,266,728	+				+0.8
4,266,729	-				+0.7
4,266,729	-				+0.2
4,266,729	-				-0.3
4,266,851	+		PP_3739	0.20	+1.0
4,266,852	-		PP_3739	0.20	+0.8
4,266,858	-		PP_3739	0.20	+0.1
4,266,989	+				-1.3
4,266,989	+		PP_3739	0.31	+0.5
4,266,989	+		PP_3739	0.31	-0.4
4,266,989	+		PP_3739	0.31	+1.1
4,266,989	+		PP_3739	0.31	+0.8
4,267,148	+		PP_3739	0.43	+1.2
4,267,149	-		PP_3739	0.43	+0.3
4,267,160	+		PP_3739	0.44	-0.3
4,267,160	+		PP_3739	0.44	-0.6
4,267,160	+		PP_3739	0.44	-0.7
4,267,161	-		PP_3739	0.44	-0.1
4,267,235	+		PP_3739	0.50	-0.6
4,267,280	-		PP_3739	0.54	+0.2
4,267,280	-		PP_3739	0.54	-1.6
4,267,412	+		PP_3739	0.64	-4.1