Strain Fitness in Pseudomonas putida KT2440 around PP_3649

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
4,143,521	+		PP_3647	0.33	-3.4
4,143,537	-		PP_3647	0.36	-2.5
4,143,605	+		PP_3647	0.50	+0.7
4,143,606	-		PP_3647	0.50	-2.6
4,143,725	+		PP_3647	0.75	-0.1
4,143,806	+				-0.0
4,143,806	+				-1.4
4,143,806	+				+0.4
4,143,807	-				+0.4
4,143,848	+				+1.5
4,143,848	+				-0.2
4,143,848	+				-0.7
4,143,849	-				+0.4
4,143,849	-				+0.5
4,143,849	-				+0.2
4,143,849	-				+0.5
4,143,963	-				-3.9
4,143,963	-				-2.2
4,144,030	+		PP_3648	0.15	-2.3
4,144,031	-		PP_3648	0.16	-0.7
4,144,031	-		PP_3648	0.16	-0.5
4,144,096	+		PP_3648	0.32	-2.8
4,144,096	+		PP_3648	0.32	-0.3
4,144,097	-		PP_3648	0.33	+1.0
4,144,155	-		PP_3648	0.47	-2.3
4,144,155	-		PP_3648	0.47	+0.6
4,144,276	+		PP_3648	0.78	-0.9
4,144,276	+		PP_3648	0.78	-0.6
4,144,276	+		PP_3648	0.78	-0.5
4,144,434	-				-0.5
4,144,434	-				-1.0
4,144,499	-				-1.7
4,144,620	+		PP_3649	0.23	-2.0
4,144,724	+		PP_3649	0.37	-3.4
4,144,724	+		PP_3649	0.37	+0.3
4,144,724	+		PP_3649	0.37	-3.2
4,144,724	+		PP_3649	0.37	-1.9
4,144,725	-		PP_3649	0.37	-1.3
4,144,725	-		PP_3649	0.37	-2.2
4,144,725	-		PP_3649	0.37	-1.3
4,144,725	-		PP_3649	0.37	-2.2
4,144,872	+		PP_3649	0.56	-1.7
4,144,873	-				-0.7
4,144,884	-		PP_3649	0.58	-1.7
4,144,884	-		PP_3649	0.58	-2.5
4,145,115	-		PP_3649	0.89	-0.6
4,145,190	+				+0.4
4,145,305	+		PP_3650	0.18	-0.0
4,145,305	+		PP_3650	0.18	+1.7
4,145,306	-		PP_3650	0.18	+0.1
4,145,306	-		PP_3650	0.18	-0.6
4,145,314	+		PP_3650	0.20	+1.7
4,145,314	+		PP_3650	0.20	-1.4
4,145,314	+		PP_3650	0.20	-0.9
4,145,315	-		PP_3650	0.20	+0.6
4,145,315	-		PP_3650	0.20	+0.2
4,145,315	-		PP_3650	0.20	-1.4
4,145,366	-		PP_3650	0.29	+1.2
4,145,471	+		PP_3650	0.48	+0.8
4,145,489	+		PP_3650	0.51	-0.7
4,145,489	+		PP_3650	0.51	+0.2
4,145,513	-		PP_3650	0.55	+1.2
4,145,513	-		PP_3650	0.55	+1.6
4,145,548	+		PP_3650	0.61	+1.7
4,145,548	+		PP_3650	0.61	-0.8
4,145,548	+		PP_3650	0.61	+1.3
4,145,549	-		PP_3650	0.61	+0.6
4,145,549	-		PP_3650	0.61	+0.4
4,145,549	-		PP_3650	0.61	-0.4
4,145,549	-		PP_3650	0.61	+0.7
4,145,591	-		PP_3650	0.69	-1.1
4,145,612	-		PP_3650	0.73	-0.9
4,145,612	-		PP_3650	0.73	-0.8
4,145,653	+		PP_3650	0.80	+0.4
4,145,653	+		PP_3650	0.80	-1.0
4,145,654	-		PP_3650	0.80	-0.3
4,145,687	-		PP_3650	0.86	+1.5
4,145,713	+				+0.4
4,145,713	+				-1.4
4,145,714	-				+0.3
4,145,714	-				-0.0
4,145,714	-				+0.9
4,145,714	-				-0.6
4,145,714	-				-0.8
4,145,714	-				+0.0
4,145,722	+				+0.8
4,145,722	+				-1.3
4,145,722	+				-0.5
4,145,722	+				-0.4
4,145,723	-				-0.4
4,145,723	-				+0.7
4,145,723	-				-0.9
4,145,723	-				+0.4
4,145,723	-				-5.0
4,145,723	-				+2.6
4,145,771	+				+1.1
4,145,870	-				+0.4
4,145,885	+				-0.1
4,145,886	-				-1.4
4,145,886	-				+1.0
4,145,923	+				+0.7
4,145,923	+				+0.9
4,145,923	+				-2.6
4,145,924	-				-0.8
4,145,924	-				+1.7
4,146,099	-				-2.0