Strain Fitness in Pseudomonas putida KT2440 around PP_3584

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
4,068,256	-		PP_3583	0.74	+0.0
4,068,342	+		PP_3583	0.77	-1.2
4,068,441	-		PP_3583	0.80	+0.9
4,068,600	+		PP_3583	0.85	+0.4
4,068,600	+		PP_3583	0.85	-1.4
4,068,600	+		PP_3583	0.85	+0.7
4,068,601	-		PP_3583	0.85	-0.6
4,068,601	-		PP_3583	0.85	+1.5
4,068,679	-		PP_3583	0.88	+1.2
4,068,679	-		PP_3583	0.88	+0.0
4,068,679	-		PP_3583	0.88	+0.9
4,068,791	+				-0.6
4,068,792	-				+0.6
4,069,121	+				+0.9
4,069,121	+				+1.1
4,069,127	+				-0.1
4,069,127	+				-0.2
4,069,128	-				-0.9
4,069,310	+				-1.5
4,069,310	+				-4.7
4,069,311	-				-1.3
4,069,521	-		PP_3584	0.15	-1.7
4,069,521	-		PP_3584	0.15	-1.2
4,069,550	+		PP_3584	0.16	-1.6
4,069,550	+		PP_3584	0.16	-1.9
4,069,551	-		PP_3584	0.16	-0.0
4,069,551	-		PP_3584	0.16	-0.5
4,069,588	-		PP_3584	0.17	+1.3
4,069,922	+		PP_3584	0.28	-0.1
4,069,922	+		PP_3584	0.28	+0.4
4,069,923	-		PP_3584	0.28	+0.6
4,069,959	-		PP_3584	0.29	-0.5
4,070,027	+		PP_3584	0.31	-1.0
4,070,160	-		PP_3584	0.35	-0.0
4,070,160	-		PP_3584	0.35	+0.8
4,070,361	-		PP_3584	0.42	-0.9
4,070,361	-		PP_3584	0.42	-2.2
4,070,523	-		PP_3584	0.47	-0.4
4,070,651	+		PP_3584	0.51	+0.2
4,070,824	+		PP_3584	0.57	-1.7
4,070,919	+		PP_3584	0.60	+0.2
4,070,947	+		PP_3584	0.61	+0.2
4,070,948	-		PP_3584	0.61	-0.7
4,070,948	-		PP_3584	0.61	+1.2
4,070,948	-		PP_3584	0.61	-1.6
4,070,948	-		PP_3584	0.61	-0.2
4,071,026	+		PP_3584	0.63	-1.1
4,071,026	+		PP_3584	0.63	-0.4
4,071,027	-		PP_3584	0.63	-3.1
4,071,027	-		PP_3584	0.63	+1.3
4,071,027	-		PP_3584	0.63	-0.1
4,071,027	-		PP_3584	0.63	-0.4
4,071,208	+		PP_3584	0.69	-0.6
4,071,208	+		PP_3584	0.69	-0.7
4,071,209	-		PP_3584	0.69	-0.9
4,071,209	-		PP_3584	0.69	-3.6
4,071,416	+		PP_3584	0.76	+0.0
4,071,417	-		PP_3584	0.76	-2.7
4,071,437	+		PP_3584	0.77	-2.4
4,071,437	+		PP_3584	0.77	-2.7
4,071,774	-		PP_3584	0.88	+1.0
4,072,073	+				+0.1
4,072,432	+		PP_3585	0.21	-1.2
4,072,432	+		PP_3585	0.21	+0.9
4,072,433	-		PP_3585	0.21	-2.0
4,072,433	-		PP_3585	0.21	-0.4
4,072,433	-		PP_3585	0.21	+1.2
4,072,433	-		PP_3585	0.21	-0.8
4,072,984	+		PP_3585	0.63	+1.3
4,072,985	-		PP_3585	0.63	-2.1
4,073,081	-		PP_3585	0.71	-2.3
4,073,146	-				+1.3