Strain Fitness in Pseudomonas putida KT2440 around PP_3571

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
4,050,347	-		PP_3570	0.30	+1.9
4,050,370	+		PP_3570	0.32	-2.8
4,050,371	-		PP_3570	0.32	-0.4
4,050,532	+		PP_3570	0.44	-0.0
4,050,565	+		PP_3570	0.47	-0.2
4,050,565	+		PP_3570	0.47	-0.4
4,050,689	+		PP_3570	0.57	+0.4
4,050,698	+		PP_3570	0.58	+1.3
4,050,699	-		PP_3570	0.58	-0.7
4,050,701	-		PP_3570	0.58	+0.1
4,050,701	-		PP_3570	0.58	+0.3
4,050,701	-		PP_3570	0.58	-0.1
4,050,701	-		PP_3570	0.58	-1.4
4,050,701	-		PP_3570	0.58	-0.0
4,050,701	-		PP_3570	0.58	+1.1
4,050,731	-		PP_3570	0.60	-2.4
4,050,731	-		PP_3570	0.60	+1.2
4,050,742	+		PP_3570	0.61	-1.3
4,050,742	+		PP_3570	0.61	-0.3
4,050,743	-		PP_3570	0.61	-1.6
4,050,743	-		PP_3570	0.61	-0.1
4,050,745	+		PP_3570	0.61	+0.1
4,050,746	-		PP_3570	0.61	+0.7
4,050,746	-		PP_3570	0.61	+0.5
4,050,746	-		PP_3570	0.61	+0.7
4,050,746	-		PP_3570	0.61	+1.3
4,050,748	+		PP_3570	0.61	+1.3
4,050,748	+		PP_3570	0.61	+0.8
4,050,749	-		PP_3570	0.62	-0.7
4,050,749	-		PP_3570	0.62	+0.0
4,050,811	+		PP_3570	0.66	-2.7
4,050,811	+		PP_3570	0.66	-2.7
4,050,812	-		PP_3570	0.67	+1.4
4,050,812	-		PP_3570	0.67	-0.1
4,050,812	-		PP_3570	0.67	-1.6
4,050,925	+		PP_3570	0.75	-0.5
4,050,946	+		PP_3570	0.77	+2.1
4,050,946	+		PP_3570	0.77	-0.1
4,050,946	+		PP_3570	0.77	+0.7
4,050,947	-		PP_3570	0.77	+1.7
4,050,947	-		PP_3570	0.77	+1.2
4,050,947	-		PP_3570	0.77	+1.2
4,050,947	-		PP_3570	0.77	+0.4
4,050,976	-		PP_3570	0.79	+0.3
4,050,992	-				-0.7
4,051,105	+		PP_3570	0.90	-4.1
4,051,105	+		PP_3570	0.90	+0.2
4,051,153	+				-0.5
4,051,153	+				-0.3
4,051,153	+				-0.4
4,051,154	-				-3.6
4,051,154	-				-1.5
4,051,154	-				-3.3
4,051,154	-				+1.9
4,051,154	-				-2.8
4,051,154	-				-0.7
4,051,154	-				+1.2
4,051,451	-		PP_3571	0.15	-0.5
4,051,465	-		PP_3571	0.16	-3.4
4,051,570	-				+0.4
4,051,610	+		PP_3571	0.28	+0.3
4,051,610	+		PP_3571	0.28	-1.5
4,051,610	+		PP_3571	0.28	+0.7
4,051,610	+		PP_3571	0.28	-1.2
4,051,975	-		PP_3571	0.59	-0.5
4,052,147	+		PP_3571	0.74	-0.5
4,052,223	+		PP_3571	0.80	-0.2
4,052,224	-		PP_3571	0.80	-0.8
4,052,339	+				+0.4
4,052,339	+				+0.8
4,052,340	-				+0.0
4,052,340	-				-0.5
4,052,340	-				+0.4
4,052,349	+				-2.2
4,052,455	-				+0.6
4,052,493	+				-0.2
4,052,493	+				+2.0
4,052,493	+				-0.9
4,053,136	+				+0.4
4,053,136	+				+0.5
4,053,208	+				-1.1
4,053,215	+				+1.9
4,053,317	+				+0.4
4,053,317	+				+0.5
4,053,324	+				-0.1
4,053,325	-				+0.0
4,053,329	-				+0.3
4,053,331	+				+0.9
4,053,357	+				+1.5