Strain Fitness in Pseudomonas putida KT2440 around PP_3552

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
4,026,049	-		PP_3550	0.68	+0.2
4,026,242	+				+1.0
4,026,243	-				+0.1
4,026,250	+				+0.5
4,026,250	+				-2.5
4,026,250	+				+1.7
4,026,277	-				-0.1
4,026,373	-				-0.4
4,026,562	-		PP_3551	0.29	+0.5
4,026,698	-		PP_3551	0.50	-3.2
4,026,994	+				+2.5
4,026,995	-				-0.2
4,026,995	-				+4.2
4,027,025	-				-0.9
4,027,167	-		PP_3552	0.10	-3.8
4,027,224	+		PP_3552	0.14	+1.1
4,027,225	-		PP_3552	0.14	-4.1
4,027,271	+		PP_3552	0.18	-1.2
4,027,271	+				-0.7
4,027,271	+		PP_3552	0.18	-2.2
4,027,271	+		PP_3552	0.18	-0.2
4,027,272	-		PP_3552	0.18	+0.1
4,027,272	-		PP_3552	0.18	-0.7
4,027,272	-		PP_3552	0.18	-0.1
4,027,272	-		PP_3552	0.18	-0.4
4,027,367	-		PP_3552	0.24	-0.7
4,027,367	-		PP_3552	0.24	-2.1
4,027,642	+		PP_3552	0.44	-2.5
4,027,642	+		PP_3552	0.44	+0.2
4,027,643	-		PP_3552	0.44	-2.7
4,027,643	-		PP_3552	0.44	-0.6
4,027,643	-		PP_3552	0.44	+1.6
4,027,926	+		PP_3552	0.64	-0.5
4,027,958	+		PP_3552	0.66	-2.6
4,027,958	+		PP_3552	0.66	+1.4
4,027,958	+		PP_3552	0.66	-2.2
4,027,958	+		PP_3552	0.66	-4.2
4,027,959	-		PP_3552	0.67	+0.4
4,027,959	-		PP_3552	0.67	-0.2
4,027,962	+		PP_3552	0.67	-0.4
4,027,962	+		PP_3552	0.67	-0.7
4,027,962	+		PP_3552	0.67	+0.0
4,027,962	+		PP_3552	0.67	-2.1
4,027,962	+		PP_3552	0.67	-3.6
4,027,962	+		PP_3552	0.67	-2.1
4,027,962	+		PP_3552	0.67	+0.3
4,027,962	+		PP_3552	0.67	-1.5
4,027,962	+		PP_3552	0.67	+0.6
4,027,962	+		PP_3552	0.67	-3.6
4,027,963	-		PP_3552	0.67	-0.1
4,027,963	-		PP_3552	0.67	-1.2
4,027,963	-		PP_3552	0.67	+0.1
4,027,963	-		PP_3552	0.67	+0.4
4,027,963	-		PP_3552	0.67	-0.8
4,027,963	-		PP_3552	0.67	-0.8
4,027,963	-		PP_3552	0.67	-3.0
4,027,963	-		PP_3552	0.67	-0.8
4,028,414	-				-0.4
4,028,414	-				+0.7
4,028,414	-				+0.9
4,028,433	-				+0.8
4,028,458	+				-2.2
4,028,463	+				+0.3
4,028,463	+				-0.6
4,028,463	+				-1.3
4,028,484	+				+2.7
4,028,484	+				+1.4
4,028,484	+				-0.3
4,028,485	-				-1.5
4,028,489	-				-1.1
4,028,560	+				-3.4
4,028,560	+				-2.6
4,028,561	-				-0.5
4,028,561	-				-0.4
4,028,561	-				+0.8
4,028,561	-				+0.5
4,028,609	+				+1.5
4,028,618	-				+2.0
4,028,618	-				-0.2
4,028,632	+				+0.4
4,028,632	+				-0.7
4,028,632	+				-0.1
4,028,633	-				-1.7
4,028,722	+				-3.3
4,028,722	+				+0.8
4,028,885	+		PP_3553	0.16	-3.3
4,028,911	-		PP_3553	0.18	+1.6
4,029,103	+		PP_3553	0.30	-2.9
4,029,104	-		PP_3553	0.30	-0.5
4,029,184	+		PP_3553	0.35	-0.8
4,029,184	+		PP_3553	0.35	+1.1
4,029,185	-		PP_3553	0.35	+0.8
4,029,185	-		PP_3553	0.35	+1.6
4,029,185	-		PP_3553	0.35	+2.1
4,029,223	+		PP_3553	0.37	-0.0
4,029,224	-		PP_3553	0.37	+1.7
4,029,224	-		PP_3553	0.37	+0.8
4,029,241	+		PP_3553	0.38	+0.4
4,029,241	+		PP_3553	0.38	-0.9
4,029,296	-		PP_3553	0.41	-3.5
4,029,337	+		PP_3553	0.44	+1.6
4,029,337	+				-2.0
4,029,338	-		PP_3553	0.44	-0.4