Strain Fitness in Pseudomonas putida KT2440 around PP_3466

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,931,272	+		PP_5604	0.25	+1.1
3,931,272	+		PP_5604	0.25	-0.6
3,931,362	+		PP_5604	0.39	+0.7
3,932,156	-		PP_3466	0.23	+0.4
3,932,293	+		PP_3466	0.31	+1.3
3,932,294	-		PP_3466	0.31	+1.5
3,932,493	+		PP_3466	0.42	-0.1
3,932,493	+		PP_3466	0.42	+1.0
3,932,494	-		PP_3466	0.43	-0.7
3,932,494	-		PP_3466	0.43	+1.3
3,932,494	-		PP_3466	0.43	+1.3
3,932,494	-		PP_3466	0.43	+0.4
3,932,563	+		PP_3466	0.47	+0.6
3,932,564	-		PP_3466	0.47	-2.5
3,932,608	+		PP_3466	0.49	+0.6
3,932,608	+		PP_3466	0.49	+1.2
3,932,608	+		PP_3466	0.49	+1.1
3,932,609	-		PP_3466	0.49	-1.7
3,932,609	-		PP_3466	0.49	+1.1
3,932,609	-		PP_3466	0.49	-2.2
3,932,609	-		PP_3466	0.49	-1.5
3,932,767	+		PP_3466	0.58	+1.9
3,932,768	-		PP_3466	0.59	+2.1
3,932,768	-		PP_3466	0.59	+3.2
3,933,130	+		PP_3466	0.80	+0.4
3,933,163	+		PP_3466	0.82	-0.2
3,933,209	+		PP_3466	0.84	+2.9
3,933,427	+				+1.6
3,933,427	+				+1.8
3,933,427	+				-0.4
3,933,457	-				+1.1
3,933,457	-				-2.0
3,933,684	+				+0.3
3,933,685	-				-3.8
3,933,742	+		PP_3467	0.13	-0.5