Strain Fitness in Pseudomonas putida KT2440 around PP_3452

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,910,696	+				+0.1
3,910,760	+				+0.3
3,910,760	+				+0.2
3,910,761	-				+1.9
3,910,761	-				+1.3
3,910,761	-				+0.5
3,910,961	+		PP_3451	0.32	-0.0
3,910,961	+		PP_3451	0.32	-2.6
3,910,961	+		PP_3451	0.32	-1.6
3,910,962	-				-0.3
3,910,976	+		PP_3451	0.34	+2.3
3,910,976	+		PP_3451	0.34	+1.1
3,910,976	+				+1.3
3,910,979	+		PP_3451	0.34	+1.5
3,911,022	-		PP_3451	0.39	+0.6
3,911,022	-		PP_3451	0.39	+0.5
3,911,102	+		PP_3451	0.49	-0.5
3,911,163	-		PP_3451	0.56	-0.7
3,911,209	+		PP_3451	0.62	-0.8
3,911,210	-		PP_3451	0.62	+0.6
3,911,210	-		PP_3451	0.62	-2.0
3,911,512	+				-0.3
3,911,581	+				-1.9
3,911,582	-				+2.3
3,911,582	-				-3.6
3,911,592	+				-1.4
3,911,592	+				-0.6
3,911,592	+				+1.5
3,911,593	-				-3.7
3,911,634	-				-1.1
3,911,680	+				-0.0
3,911,681	-				-2.3
3,911,681	-				+1.1
3,911,681	-				+0.6
3,911,681	-				-2.9
3,911,764	+				-0.2
3,911,881	+		PP_3452	0.21	-2.8
3,911,882	-		PP_3452	0.21	+1.3
3,911,882	-		PP_3452	0.21	-4.4
3,911,882	-		PP_3452	0.21	+3.3
3,911,882	-		PP_3452	0.21	+0.6
3,912,033	+		PP_3452	0.35	+1.2
3,912,033	+		PP_3452	0.35	-0.0
3,912,034	-		PP_3452	0.35	+1.4
3,912,034	-		PP_3452	0.35	+0.4
3,912,034	-		PP_3452	0.35	-4.0
3,912,104	+		PP_3452	0.41	+1.7
3,912,105	-		PP_3452	0.41	+1.8
3,912,114	+		PP_3452	0.42	+1.7
3,912,165	+		PP_3452	0.47	+0.7
3,912,165	+		PP_3452	0.47	-0.7
3,912,165	+		PP_3452	0.47	+0.3
3,912,166	-		PP_3452	0.47	+1.2
3,912,166	-		PP_3452	0.47	+0.3
3,912,166	-		PP_3452	0.47	+0.4
3,912,195	+		PP_3452	0.49	+1.0
3,912,195	+		PP_3452	0.49	-1.1
3,912,201	+		PP_3452	0.50	+1.2
3,912,202	-		PP_3452	0.50	-4.0
3,912,237	+		PP_3452	0.53	-1.8
3,912,238	-		PP_3452	0.53	+1.2
3,912,268	-		PP_3452	0.56	+0.1
3,912,449	+		PP_3452	0.73	-2.2
3,912,449	+		PP_3452	0.73	+1.5
3,912,676	+				-0.5
3,912,677	-				+1.0
3,912,677	-				-1.2
3,912,677	-				+3.0
3,912,677	-				+2.6
3,912,678	+				-0.6
3,912,678	+				-0.0
3,912,678	+				+0.7
3,912,679	-				-0.3
3,912,679	-				-0.3
3,912,679	-				+0.4
3,912,679	-				+1.0
3,912,744	+				-0.8
3,913,057	+		PP_3453	0.22	+0.3
3,913,258	+		PP_3453	0.37	-2.6
3,913,259	-		PP_3453	0.37	+1.4
3,913,259	-		PP_3453	0.37	-1.1
3,913,270	+		PP_3453	0.38	+0.2
3,913,270	+		PP_3453	0.38	-0.8
3,913,270	+		PP_3453	0.38	-3.5
3,913,270	+		PP_3453	0.38	+0.5
3,913,271	-		PP_3453	0.38	+0.9
3,913,271	-		PP_3453	0.38	+0.6
3,913,271	-		PP_3453	0.38	+1.4
3,913,408	-		PP_3453	0.48	-0.3
3,913,408	-		PP_3453	0.48	+1.5
3,913,529	+		PP_3453	0.58	+2.3
3,913,530	-		PP_3453	0.58	+1.3
3,913,707	+		PP_3453	0.71	+2.0
3,913,707	+		PP_3453	0.71	-0.6