Strain Fitness in Pseudomonas putida KT2440 around PP_3369

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,811,950	+		PP_3368	0.23	+0.4
3,811,951	-		PP_3368	0.23	-0.9
3,811,951	-		PP_3368	0.23	+0.0
3,812,176	-				+1.7
3,812,312	-		PP_3368	0.54	+0.7
3,812,320	+		PP_3368	0.54	+0.5
3,812,320	+		PP_3368	0.54	-0.7
3,812,320	+		PP_3368	0.54	-0.8
3,812,320	+		PP_3368	0.54	+0.4
3,812,321	-		PP_3368	0.54	-1.8
3,812,321	-		PP_3368	0.54	+0.4
3,812,321	-		PP_3368	0.54	+0.2
3,812,321	-		PP_3368	0.54	+0.3
3,812,380	-		PP_3368	0.59	-0.9
3,812,380	-		PP_3368	0.59	+1.2
3,812,380	-		PP_3368	0.59	+0.3
3,812,380	-		PP_3368	0.59	-2.1
3,812,527	+		PP_3368	0.72	+0.0
3,812,528	-		PP_3368	0.72	-0.6
3,812,528	-		PP_3368	0.72	-3.6
3,812,561	+		PP_3368	0.75	+0.2
3,812,562	-		PP_3368	0.75	-0.3
3,812,787	+				+0.5
3,812,826	+				-2.2
3,812,827	-				+0.3
3,812,876	+				+0.1
3,812,876	+				+0.3
3,812,877	-				-0.9
3,812,884	+				+1.1
3,812,889	+				-1.2
3,812,897	+				+0.3
3,812,897	+				+0.9
3,812,898	-				-1.8
3,812,898	-				+0.6
3,813,089	+		PP_3369	0.19	+0.9
3,813,090	-		PP_3369	0.19	+1.1
3,813,300	+		PP_3369	0.44	+0.1
3,813,300	+		PP_3369	0.44	+1.2
3,813,301	-		PP_3369	0.44	-2.8
3,813,419	+		PP_3369	0.58	+0.0
3,813,419	+		PP_3369	0.58	-0.9
3,813,420	-		PP_3369	0.58	+1.4
3,813,461	+		PP_3369	0.63	+2.0
3,813,461	+		PP_3369	0.63	+2.1
3,813,765	+				+1.5
3,813,837	+				+0.6
3,813,838	-				+1.3
3,813,879	-				+0.5
3,813,882	+				+0.8
3,813,882	+				+0.2
3,813,882	+				-0.7
3,813,882	+				-2.1
3,813,883	-				-2.3
3,813,883	-				+0.8
3,814,053	-		PP_3370	0.18	-1.3
3,814,053	-		PP_3370	0.18	+0.5
3,814,053	-		PP_3370	0.18	-0.6
3,814,053	-		PP_3370	0.18	-2.5
3,814,103	-		PP_3370	0.23	+1.4
3,814,250	+		PP_3370	0.38	-0.5
3,814,250	+		PP_3370	0.38	+0.9
3,814,250	+		PP_3370	0.38	-0.9
3,814,250	+		PP_3370	0.38	+0.3
3,814,250	+		PP_3370	0.38	-1.7
3,814,250	+		PP_3370	0.38	+1.3
3,814,250	+		PP_3370	0.38	+2.1
3,814,250	+		PP_3370	0.38	-1.5
3,814,250	+		PP_3370	0.38	-1.0
3,814,251	-		PP_3370	0.38	-1.0
3,814,251	-				-0.3
3,814,262	+		PP_3370	0.39	+1.0
3,814,262	+		PP_3370	0.39	-0.5
3,814,262	+		PP_3370	0.39	-3.2
3,814,370	+		PP_3370	0.50	-2.6
3,814,370	+		PP_3370	0.50	-1.3
3,814,370	+		PP_3370	0.50	+0.6
3,814,371	-		PP_3370	0.50	-0.1
3,814,371	-				+0.3
3,814,445	+		PP_3370	0.58	-3.1
3,814,460	+		PP_3370	0.59	-0.2
3,814,461	-		PP_3370	0.59	+1.0
3,814,594	-		PP_3370	0.72	+1.0
3,814,594	-		PP_3370	0.72	+0.3
3,814,610	+		PP_3370	0.74	+1.2