Strain Fitness in Pseudomonas putida KT2440 around PP_3350

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,786,508	+		PP_3349	0.44	+0.5
3,786,508	+		PP_3349	0.44	+0.7
3,786,508	+		PP_3349	0.44	+0.9
3,786,508	+		PP_3349	0.44	+1.3
3,786,508	+		PP_3349	0.44	-0.1
3,786,508	+		PP_3349	0.44	-1.4
3,786,509	-		PP_3349	0.44	+1.1
3,786,701	-		PP_3349	0.59	+3.7
3,786,701	-		PP_3349	0.59	+0.3
3,786,710	+				+0.5
3,786,710	+		PP_3349	0.60	+0.4
3,786,781	+		PP_3349	0.66	+0.9
3,786,782	-		PP_3349	0.66	+1.4
3,786,782	-		PP_3349	0.66	+0.4
3,786,907	+		PP_3349	0.76	+1.9
3,786,908	-		PP_3349	0.76	-0.4
3,786,930	+		PP_3349	0.78	-1.7
3,787,074	+		PP_3349	0.89	+0.8
3,787,322	+				-1.4
3,787,322	+				+1.5
3,787,323	-				+0.4
3,787,323	-				-1.0
3,787,323	-				+1.3
3,787,385	+		PP_3350	0.10	-0.1
3,787,448	+		PP_3350	0.15	+1.2
3,787,449	-		PP_3350	0.15	-1.3
3,787,449	-		PP_3350	0.15	-3.7
3,787,583	+		PP_3350	0.24	+0.6
3,787,583	+		PP_3350	0.24	+0.1
3,787,584	-				-0.3
3,787,584	-		PP_3350	0.24	-0.9
3,787,584	-		PP_3350	0.24	+1.2
3,787,832	+		PP_3350	0.42	-2.1
3,787,894	+		PP_3350	0.47	+0.2
3,787,946	+		PP_3350	0.51	+3.4
3,787,946	+		PP_3350	0.51	-0.3
3,788,100	-		PP_3350	0.62	+0.6
3,788,154	+		PP_3350	0.65	+0.3
3,788,155	-		PP_3350	0.66	-1.5
3,788,156	+		PP_3350	0.66	-0.3
3,788,157	-		PP_3350	0.66	-1.4
3,788,234	+		PP_3350	0.71	-0.8
3,788,234	+		PP_3350	0.71	+0.3
3,788,234	+				+1.7
3,788,234	+		PP_3350	0.71	-0.4
3,788,259	+		PP_3350	0.73	+1.3
3,788,281	-		PP_3350	0.75	-2.6
3,788,450	+		PP_3350	0.87	-2.6
3,788,451	-		PP_3350	0.87	-2.6
3,788,505	-				-2.7
3,788,612	-				+0.2
3,788,740	+				-2.4
3,788,821	-				-1.3
3,788,842	+				+1.0
3,788,876	-				-0.7
3,789,301	+		PP_3352	0.24	-0.7
3,789,301	+		PP_3352	0.24	-2.8
3,789,373	+		PP_3352	0.29	-0.0
3,789,374	-		PP_3352	0.29	+0.4
3,789,374	-		PP_3352	0.29	-0.9
3,789,448	+		PP_3352	0.33	-1.0
3,789,448	+		PP_3352	0.33	+0.7
3,789,449	-		PP_3352	0.33	+0.9
3,789,491	-		PP_3352	0.36	-0.6
3,789,491	-		PP_3352	0.36	+1.6
3,789,616	+		PP_3352	0.43	+0.9
3,789,616	+		PP_3352	0.43	-3.2
3,789,617	-		PP_3352	0.43	+1.4
3,789,617	-		PP_3352	0.43	+1.0
3,789,628	+		PP_3352	0.44	+0.5