Strain Fitness in Pseudomonas putida KT2440 around PP_3319

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,753,918	+				+1.5
3,754,186	+		PP_3318	0.57	+0.2
3,754,186	+		PP_3318	0.57	+0.6
3,754,298	+				-1.8
3,754,333	+				+0.2
3,754,408	+				+0.9
3,754,409	-				-1.2
3,754,409	-				-1.0
3,754,418	+				+0.9
3,754,459	+				+1.1
3,754,460	-				+1.3
3,754,460	-				+1.5
3,754,581	+				+2.3
3,754,582	-				-1.2
3,754,619	-				-1.0
3,754,625	+				-0.3
3,754,779	+				-0.8
3,754,780	-				-1.0
3,754,823	+		PP_3319	0.12	+1.9
3,754,823	+		PP_3319	0.12	+0.7
3,754,824	-		PP_3319	0.12	+2.4
3,754,824	-		PP_3319	0.12	-2.4
3,754,824	-		PP_3319	0.12	+0.3
3,754,871	+		PP_3319	0.14	+0.2
3,754,872	-		PP_3319	0.14	+1.5
3,754,872	-		PP_3319	0.14	+0.8
3,754,920	+		PP_3319	0.16	-0.3
3,754,920	+		PP_3319	0.16	+0.1
3,754,920	+		PP_3319	0.16	-2.2
3,754,927	+		PP_3319	0.17	+1.9
3,754,927	+		PP_3319	0.17	-1.7
3,754,927	+		PP_3319	0.17	+0.5
3,754,928	-		PP_3319	0.17	-1.0
3,754,928	-		PP_3319	0.17	-1.2
3,754,928	-		PP_3319	0.17	+0.2
3,754,928	-		PP_3319	0.17	+2.2
3,754,952	-		PP_3319	0.18	+0.5
3,754,990	+		PP_3319	0.20	-0.0
3,754,992	+		PP_3319	0.20	-0.6
3,754,993	-		PP_3319	0.20	+0.4
3,755,132	+		PP_3319	0.26	+2.0
3,755,133	-		PP_3319	0.26	+1.1
3,755,133	-		PP_3319	0.26	+2.3
3,755,133	-		PP_3319	0.26	+0.5
3,755,136	+				+2.9
3,755,137	-		PP_3319	0.26	-0.8
3,755,211	-		PP_3319	0.30	+0.5
3,755,211	-		PP_3319	0.30	+1.6
3,755,478	-		PP_3319	0.42	+0.8
3,755,592	+		PP_3319	0.47	+0.9
3,755,592	+		PP_3319	0.47	+0.9
3,755,593	-		PP_3319	0.47	+0.9
3,755,593	-		PP_3319	0.47	-0.7
3,755,593	-		PP_3319	0.47	+0.8
3,755,593	-		PP_3319	0.47	+1.0
3,755,640	+		PP_3319	0.49	+0.7
3,755,640	+		PP_3319	0.49	+0.6
3,755,641	-		PP_3319	0.49	-0.2
3,755,705	+		PP_3319	0.52	-0.2
3,755,817	+		PP_3319	0.57	-0.9
3,755,817	+		PP_3319	0.57	+0.6
3,755,818	-		PP_3319	0.57	-0.6
3,755,822	+		PP_3319	0.57	+0.0
3,755,822	+		PP_3319	0.57	-2.7
3,755,861	+		PP_3319	0.59	-3.7
3,755,864	+		PP_3319	0.59	+0.2
3,755,864	+		PP_3319	0.59	-0.1
3,755,865	-		PP_3319	0.59	-0.9
3,755,865	-		PP_3319	0.59	-2.5
3,755,865	-		PP_3319	0.59	-0.2
3,755,865	-		PP_3319	0.59	+0.1
3,755,870	-		PP_3319	0.59	-1.6
3,755,928	+		PP_3319	0.62	+0.3
3,755,929	-		PP_3319	0.62	+0.4
3,755,929	-		PP_3319	0.62	+0.3
3,755,981	+		PP_3319	0.65	-2.5
3,755,981	+		PP_3319	0.65	+1.0
3,755,981	+		PP_3319	0.65	-1.4
3,756,010	+		PP_3319	0.66	+0.9
3,756,014	+		PP_3319	0.66	-0.4
3,756,014	+		PP_3319	0.66	+1.3
3,756,014	+		PP_3319	0.66	+0.4
3,756,015	-		PP_3319	0.66	+0.2
3,756,015	-		PP_3319	0.66	+0.7
3,756,015	-		PP_3319	0.66	+1.7
3,756,015	-		PP_3319	0.66	+1.0
3,756,060	+		PP_3319	0.68	+0.5
3,756,073	+		PP_3319	0.69	-0.4
3,756,074	-		PP_3319	0.69	+1.4
3,756,192	-		PP_3319	0.74	+3.2
3,756,245	-		PP_3319	0.77	+1.0
3,756,245	-		PP_3319	0.77	-0.1
3,756,266	+		PP_3319	0.77	+1.4
3,756,266	+		PP_3319	0.77	-0.8
3,756,281	-		PP_3319	0.78	+1.2
3,756,326	+		PP_3319	0.80	-3.9
3,756,326	+		PP_3319	0.80	+0.3
3,756,326	+		PP_3319	0.80	+1.6
3,756,327	-		PP_3319	0.80	+0.1
3,756,382	+		PP_3319	0.83	-2.2
3,756,454	+		PP_3319	0.86	-1.7
3,756,455	-		PP_3319	0.86	-0.3
3,756,520	+		PP_3319	0.89	-0.4
3,756,706	-				+2.0
3,756,708	+				-3.0
3,756,708	+				+1.7
3,756,708	+				+1.5
3,756,709	-				-0.9
3,756,760	-				-1.9
3,756,800	+				-0.1
3,756,819	-				+0.6
3,756,884	-				-0.6
3,756,911	+				+1.9
3,756,912	-				-2.7
3,756,912	-				+0.6
3,756,950	+				-1.4
3,756,955	+				-0.0
3,756,956	-				-2.3
3,756,990	+		PP_3320	0.26	+1.3
3,756,990	+		PP_3320	0.26	-1.1
3,756,991	-		PP_3320	0.26	-1.9
3,756,991	-		PP_3320	0.26	-1.1
3,757,092	-		PP_3320	0.86	-0.3
3,757,092	-		PP_3320	0.86	-2.6
3,757,092	-		PP_3320	0.86	+2.4
3,757,205	-				-0.2
3,757,220	+				+1.3
3,757,220	+				-0.1
3,757,221	-				+0.3
3,757,221	-				-2.5
3,757,221	-				-3.3
3,757,293	+		PP_3321	0.22	-0.1
3,757,294	-		PP_3321	0.22	-3.6
3,757,342	-		PP_3321	0.32	+0.2
3,757,342	-		PP_3321	0.32	-0.1
3,757,342	-		PP_3321	0.32	-1.0
3,757,395	+		PP_3321	0.42	+0.3
3,757,395	+		PP_3321	0.42	-2.1
3,757,395	+		PP_3321	0.42	-0.7
3,757,395	+		PP_3321	0.42	-2.0
3,757,396	-		PP_3321	0.42	-0.4
3,757,396	-		PP_3321	0.42	+0.3
3,757,396	-		PP_3321	0.42	-2.5
3,757,396	-		PP_3321	0.42	-2.3
3,757,467	+		PP_3321	0.56	-0.0
3,757,467	+		PP_3321	0.56	-0.7
3,757,468	-		PP_3321	0.56	-0.3
3,757,468	-		PP_3321	0.56	+0.9
3,757,569	+		PP_3321	0.76	+1.5
3,757,570	-		PP_3321	0.76	-0.2
3,757,570	-		PP_3321	0.76	+0.5
3,757,703	+				+0.6
3,757,704	-				-2.5
3,757,704	-				-4.2
3,757,704	-				+0.9