Strain Fitness in Pseudomonas putida KT2440 around PP_3309

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,742,725	+				+0.0
3,742,725	+				+1.7
3,742,725	+				-0.1
3,742,726	-				+0.7
3,742,726	-				+0.9
3,742,771	-				-0.3
3,742,995	-		PP_3307	0.77	+1.2
3,742,995	-		PP_3307	0.77	-4.9
3,743,189	+				-1.8
3,743,189	+				+0.7
3,743,580	+		PP_3308	0.73	-0.1
3,743,637	+		PP_3308	0.84	-1.3
3,743,637	+		PP_3308	0.84	-0.6
3,743,638	-		PP_3308	0.84	-1.5
3,743,639	+		PP_3308	0.84	-1.7
3,743,639	+		PP_3308	0.84	+1.0
3,743,639	+		PP_3308	0.84	-0.6
3,743,639	+		PP_3308	0.84	-3.6
3,743,639	+		PP_3308	0.84	-0.3
3,743,639	+		PP_3308	0.84	+1.9
3,743,639	+		PP_3308	0.84	-1.0
3,743,639	+		PP_3308	0.84	-2.5
3,743,639	+		PP_3308	0.84	+1.2
3,743,639	+		PP_3308	0.84	+1.2
3,743,639	+		PP_3308	0.84	+0.6
3,743,639	+		PP_3308	0.84	+1.0
3,743,640	-		PP_3308	0.85	+0.3
3,743,640	-		PP_3308	0.85	-3.5
3,743,640	-		PP_3308	0.85	+0.5
3,743,640	-		PP_3308	0.85	+0.6
3,743,640	-		PP_3308	0.85	+0.1
3,743,972	+		PP_3309	0.25	-0.3
3,744,058	+		PP_3309	0.34	-1.4
3,744,059	-		PP_3309	0.34	-1.8
3,744,068	+		PP_3309	0.35	-3.7
3,744,069	-		PP_3309	0.35	+0.3
3,744,069	-		PP_3309	0.35	-2.0
3,744,071	+		PP_3309	0.35	+0.1
3,744,072	-		PP_3309	0.35	+1.0
3,744,072	-		PP_3309	0.35	-3.2
3,744,077	+		PP_3309	0.36	-0.1
3,744,078	-		PP_3309	0.36	-2.2
3,744,202	+		PP_3309	0.48	-1.4
3,744,202	+		PP_3309	0.48	-1.2
3,744,202	+		PP_3309	0.48	-0.1
3,744,270	+		PP_3309	0.55	+1.0
3,744,270	+		PP_3309	0.55	+0.5
3,744,741	+				-2.2
3,744,758	+				-0.3
3,744,758	+				-1.0
3,744,846	+				-0.7
3,744,846	+				+1.2
3,744,847	-				+0.8
3,744,847	-				+0.5
3,744,847	-				+1.7
3,744,882	+				+1.4
3,744,942	+		PP_3310	0.10	+0.1
3,744,942	+		PP_3310	0.10	+1.5
3,744,942	+		PP_3310	0.10	-0.9
3,744,943	-		PP_3310	0.10	-2.5
3,744,943	-		PP_3310	0.10	-2.5
3,744,943	-		PP_3310	0.10	+1.5
3,744,943	-		PP_3310	0.10	+0.3
3,744,964	+		PP_3310	0.11	+0.7
3,744,965	-		PP_3310	0.11	-1.7
3,745,108	+		PP_3310	0.18	-1.6
3,745,240	+		PP_3310	0.24	+0.6
3,745,241	-		PP_3310	0.24	-1.3
3,745,258	+				-1.0
3,745,258	+		PP_3310	0.24	+0.3
3,745,293	-		PP_3310	0.26	+1.2
3,745,297	+		PP_3310	0.26	+1.3
3,745,360	+		PP_3310	0.29	+0.4
3,745,361	-		PP_3310	0.29	-1.0
3,745,395	+		PP_3310	0.31	+1.0
3,745,396	-		PP_3310	0.31	-2.6
3,745,396	-		PP_3310	0.31	-1.5
3,745,453	+		PP_3310	0.33	+1.6
3,745,684	+		PP_3310	0.44	+0.3
3,745,685	-		PP_3310	0.44	-0.8
3,745,711	+		PP_3310	0.45	+0.5