Strain Fitness in Pseudomonas putida KT2440 around PP_3232

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,667,927	-		PP_3231	0.44	-3.9
3,667,929	+		PP_3231	0.45	-0.6
3,667,949	+		PP_3231	0.46	-1.4
3,667,949	+		PP_3231	0.46	+0.7
3,668,091	+		PP_3231	0.56	+0.6
3,668,178	+		PP_3231	0.63	-1.6
3,668,215	-		PP_3231	0.65	+0.6
3,668,215	-		PP_3231	0.65	-0.4
3,668,595	+				+0.1
3,668,615	+				+1.1
3,668,616	-				+0.5
3,668,616	-				+1.6
3,668,638	-				-0.7
3,668,700	+				+0.9
3,668,865	-		PP_3232	0.21	-1.2
3,668,946	+		PP_3232	0.35	+0.1
3,668,946	+		PP_3232	0.35	+0.5
3,668,946	+		PP_3232	0.35	-2.3
3,668,947	-		PP_3232	0.35	-2.1
3,669,053	+		PP_3232	0.54	-4.1
3,669,285	+				+0.1
3,669,285	+				-0.1
3,669,285	+				-0.1
3,669,285	+				-1.5
3,669,286	-				-0.0
3,669,286	-				-0.2
3,669,286	-				-1.9
3,669,289	+				+0.8
3,669,438	-				-0.2
3,669,438	-				-0.6
3,669,471	+				-3.7
3,669,471	+				+0.8
3,669,472	-				+0.1
3,669,472	-				+0.4
3,669,674	-				-0.3
3,669,774	+				-0.8
3,669,774	+				-1.9
3,669,775	-				+0.7
3,669,860	+		PP_3233	0.21	-1.0
3,669,860	+		PP_3233	0.21	+1.0
3,670,001	-		PP_3233	0.40	-0.8
3,670,229	+		PP_3233	0.71	-1.5
3,670,295	+		PP_3233	0.80	-0.9
3,670,296	-		PP_3233	0.80	-0.7
3,670,306	+		PP_3233	0.82	-3.5