Strain Fitness in Pseudomonas putida KT2440 around PP_3224

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,658,991	+		PP_3223	0.46	-1.7
3,659,150	+		PP_3223	0.56	+0.6
3,659,151	-		PP_3223	0.56	-2.6
3,659,175	-		PP_3223	0.57	+1.1
3,659,175	-		PP_3223	0.57	+0.4
3,659,259	-		PP_3223	0.63	+0.0
3,659,259	-		PP_3223	0.63	+1.1
3,659,456	+		PP_3223	0.75	-2.1
3,659,457	-		PP_3223	0.75	-0.6
3,659,583	+		PP_3223	0.83	+1.3
3,659,583	+		PP_3223	0.83	-3.8
3,659,583	+		PP_3223	0.83	+0.6
3,659,583	+		PP_3223	0.83	-0.4
3,659,584	-		PP_3223	0.83	-2.6
3,659,584	-		PP_3223	0.83	-3.3
3,659,585	+		PP_3223	0.83	-1.6
3,659,585	+		PP_3223	0.83	+1.6
3,659,585	+		PP_3223	0.83	-0.2
3,659,586	-		PP_3223	0.83	+2.2
3,659,586	-		PP_3223	0.83	-1.1
3,659,712	-				+0.2
3,660,005	+				-0.2
3,660,078	+		PP_3224	0.17	-0.5
3,660,078	+		PP_3224	0.17	+0.9
3,660,079	-		PP_3224	0.17	-0.5
3,660,079	-		PP_3224	0.17	-1.4
3,660,079	-		PP_3224	0.17	-0.8
3,660,079	-		PP_3224	0.17	-2.6
3,660,079	-		PP_3224	0.17	-0.7
3,660,278	-		PP_3224	0.43	-3.4
3,660,286	+		PP_3224	0.44	+0.7
3,660,287	-		PP_3224	0.44	+0.2
3,660,301	+		PP_3224	0.45	-0.7
3,660,304	+		PP_3224	0.46	-2.0
3,660,304	+		PP_3224	0.46	-0.8
3,660,305	-		PP_3224	0.46	+0.0
3,660,436	+		PP_3224	0.62	+0.3
3,660,598	+		PP_3224	0.83	-0.7
3,660,599	-		PP_3224	0.83	+0.2
3,660,599	-		PP_3224	0.83	-2.6
3,660,599	-		PP_3224	0.83	+0.3
3,660,599	-		PP_3224	0.83	-0.4
3,660,637	+		PP_3224	0.88	-3.4
3,660,901	+		PP_3225	0.16	-0.9
3,660,901	+		PP_3225	0.16	-2.9
3,660,902	-		PP_3225	0.16	-0.2
3,660,902	-		PP_3225	0.16	+1.1
3,660,902	-		PP_3225	0.16	+0.8
3,661,052	-		PP_3225	0.32	+0.6
3,661,161	+		PP_3225	0.43	+0.8
3,661,339	-		PP_3225	0.62	+1.1
3,661,564	-		PP_3225	0.86	-1.6