Strain Fitness in Pseudomonas putida KT2440 around PP_3170

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,590,964	+		PP_3169	0.15	-2.5
3,590,964	+		PP_3169	0.15	-0.2
3,590,964	+		PP_3169	0.15	+1.0
3,590,965	-		PP_3169	0.15	-0.5
3,590,965	-		PP_3169	0.15	+0.4
3,591,060	-		PP_3169	0.24	+1.4
3,591,060	-		PP_3169	0.24	+0.5
3,591,060	-		PP_3169	0.24	+0.1
3,591,060	-		PP_3169	0.24	+0.4
3,591,094	+		PP_3169	0.27	+1.3
3,591,132	+		PP_3169	0.30	-2.2
3,591,302	+		PP_3169	0.46	+1.0
3,591,303	-		PP_3169	0.46	+1.3
3,591,309	+		PP_3169	0.47	-0.7
3,591,465	+		PP_3169	0.61	+0.3
3,591,466	-		PP_3169	0.61	-0.2
3,591,468	+		PP_3169	0.61	-4.4
3,591,469	-		PP_3169	0.61	-0.8
3,591,607	-		PP_3169	0.74	+0.1
3,591,666	+		PP_3169	0.80	-4.7
3,591,667	-		PP_3169	0.80	-2.6
3,591,667	-		PP_3169	0.80	-3.6
3,591,667	-		PP_3169	0.80	-2.4
3,591,667	-		PP_3169	0.80	+0.0
3,591,785	+				-1.6
3,591,785	+				-0.2
3,591,785	+				+0.8
3,591,786	-				+1.3
3,591,786	-				+0.6
3,591,786	-				-1.9
3,591,883	-				-1.3
3,591,921	+				+1.0
3,591,922	-				+1.0
3,591,922	-				+1.9
3,592,114	+		PP_3170	0.18	-2.6
3,592,492	-		PP_3170	0.59	-1.1
3,592,682	-		PP_3170	0.80	+0.1
3,592,682	-		PP_3170	0.80	+1.0
3,592,685	+		PP_3170	0.80	-1.5
3,592,685	+		PP_3170	0.80	-0.1
3,592,685	+		PP_3170	0.80	-0.5
3,592,685	+		PP_3170	0.80	+0.2
3,592,686	-		PP_3170	0.80	-0.4
3,592,686	-		PP_3170	0.80	+1.7
3,592,686	-		PP_3170	0.80	+0.2
3,592,686	-				-0.4
3,592,686	-		PP_3170	0.80	-3.8
3,592,686	-		PP_3170	0.80	-4.0
3,592,686	-		PP_3170	0.80	-0.9
3,592,686	-		PP_3170	0.80	-1.8
3,592,688	-		PP_3170	0.81	-0.9
3,592,729	-		PP_3170	0.85	-4.1
3,592,946	+				+0.3
3,593,073	+		PP_3171	0.11	-0.2
3,593,073	+		PP_3171	0.11	-1.3
3,593,074	-		PP_3171	0.11	-1.4
3,593,083	-		PP_3171	0.12	-1.3
3,593,193	-		PP_3171	0.23	-1.0
3,593,249	+		PP_3171	0.29	-3.4
3,593,249	+		PP_3171	0.29	-3.6
3,593,250	-		PP_3171	0.29	+1.1
3,593,250	-		PP_3171	0.29	+0.9
3,593,250	-		PP_3171	0.29	-1.3
3,593,379	+		PP_3171	0.42	-2.6
3,593,379	+		PP_3171	0.42	+1.7
3,593,379	+		PP_3171	0.42	+1.4
3,593,499	+		PP_3171	0.54	-3.0
3,593,499	+		PP_3171	0.54	-3.6
3,593,500	-		PP_3171	0.55	-1.0
3,593,500	-		PP_3171	0.55	-3.3
3,593,596	-		PP_3171	0.64	+1.8