Strain Fitness in Pseudomonas putida KT2440 around PP_3136

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3134 and PP_3135 are separated by 1 nucleotidesPP_3135 and PP_3136 are separated by 8 nucleotidesPP_3136 and PP_3137 are separated by 5 nucleotidesPP_3137 and PP_3138 are separated by 12 nucleotides PP_3134: PP_3134 - conserved protein of unknown function, at 3,550,152 to 3,550,847 _3134 PP_3135: PP_3135 - putative Glycosyl transferase, at 3,550,849 to 3,551,805 _3135 PP_3136: PP_3136 - putative O-acetyltransferase, at 3,551,814 to 3,552,338 _3136 PP_3137: PP_3137 - Glycosyl transferase, group 2 family protein, at 3,552,344 to 3,553,321 _3137 PP_3138: PP_3138 - VirK domain protein, at 3,553,334 to 3,554,335 _3138 Position (kb) 3551 3552 3553Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3550.827 kb on + strandat 3550.827 kb on + strandat 3550.957 kb on + strand, within PP_3135at 3550.958 kb on - strand, within PP_3135at 3551.101 kb on + strandat 3551.102 kb on - strand, within PP_3135at 3551.102 kb on - strand, within PP_3135at 3551.102 kb on - strand, within PP_3135at 3551.102 kb on - strand, within PP_3135at 3551.102 kb on - strand, within PP_3135at 3551.119 kb on - strand, within PP_3135at 3551.164 kb on + strand, within PP_3135at 3551.164 kb on + strand, within PP_3135at 3551.165 kb on - strand, within PP_3135at 3551.165 kb on - strand, within PP_3135at 3551.245 kb on + strand, within PP_3135at 3551.380 kb on + strand, within PP_3135at 3551.381 kb on - strand, within PP_3135at 3551.441 kb on - strand, within PP_3135at 3551.444 kb on - strandat 3551.501 kb on - strand, within PP_3135at 3551.587 kb on + strand, within PP_3135at 3551.612 kb on - strand, within PP_3135at 3551.803 kb on + strandat 3551.803 kb on + strandat 3551.803 kb on + strandat 3551.803 kb on + strandat 3551.803 kb on + strandat 3551.803 kb on + strandat 3551.804 kb on - strandat 3551.804 kb on - strandat 3551.804 kb on - strandat 3551.915 kb on + strand, within PP_3136at 3551.916 kb on - strand, within PP_3136at 3551.958 kb on + strand, within PP_3136at 3551.958 kb on + strand, within PP_3136at 3551.959 kb on - strand, within PP_3136at 3551.959 kb on - strand, within PP_3136at 3552.072 kb on + strand, within PP_3136at 3552.203 kb on + strand, within PP_3136at 3552.253 kb on + strand, within PP_3136at 3552.253 kb on + strand, within PP_3136at 3552.344 kb on - strandat 3552.443 kb on + strand, within PP_3137at 3552.443 kb on + strand, within PP_3137at 3552.443 kb on + strand, within PP_3137at 3552.443 kb on + strand, within PP_3137at 3552.443 kb on + strand, within PP_3137at 3552.444 kb on - strand, within PP_3137at 3552.444 kb on - strand, within PP_3137at 3552.504 kb on + strand, within PP_3137at 3552.505 kb on - strand, within PP_3137at 3552.600 kb on + strandat 3552.600 kb on + strand, within PP_3137at 3552.600 kb on + strand, within PP_3137at 3552.601 kb on - strand, within PP_3137at 3552.976 kb on + strand, within PP_3137at 3553.013 kb on + strand, within PP_3137at 3553.014 kb on - strand, within PP_3137at 3553.014 kb on - strand, within PP_3137at 3553.086 kb on + strand, within PP_3137at 3553.086 kb on + strand, within PP_3137at 3553.086 kb on + strand, within PP_3137at 3553.087 kb on - strand, within PP_3137at 3553.151 kb on + strand, within PP_3137at 3553.152 kb on - strand, within PP_3137at 3553.313 kb on + strandat 3553.314 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.25 vol% (C)
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3,550,827 + +1.4
3,550,827 + +1.4
3,550,957 + PP_3135 0.11 +0.2
3,550,958 - PP_3135 0.11 +0.5
3,551,101 + +0.1
3,551,102 - PP_3135 0.26 -0.1
3,551,102 - PP_3135 0.26 -2.0
3,551,102 - PP_3135 0.26 +0.1
3,551,102 - PP_3135 0.26 +0.6
3,551,102 - PP_3135 0.26 -1.7
3,551,119 - PP_3135 0.28 +0.8
3,551,164 + PP_3135 0.33 +0.5
3,551,164 + PP_3135 0.33 -2.0
3,551,165 - PP_3135 0.33 +0.5
3,551,165 - PP_3135 0.33 -0.1
3,551,245 + PP_3135 0.41 +0.7
3,551,380 + PP_3135 0.55 -1.9
3,551,381 - PP_3135 0.56 -0.0
3,551,441 - PP_3135 0.62 -0.2
3,551,444 - -1.2
3,551,501 - PP_3135 0.68 +0.5
3,551,587 + PP_3135 0.77 -0.9
3,551,612 - PP_3135 0.80 +2.0
3,551,803 + +0.6
3,551,803 + -0.5
3,551,803 + -0.2
3,551,803 + +1.1
3,551,803 + +0.6
3,551,803 + +0.8
3,551,804 - -1.6
3,551,804 - +0.4
3,551,804 - +1.6
3,551,915 + PP_3136 0.19 -0.4
3,551,916 - PP_3136 0.19 +0.0
3,551,958 + PP_3136 0.27 +0.0
3,551,958 + PP_3136 0.27 +0.1
3,551,959 - PP_3136 0.28 -2.9
3,551,959 - PP_3136 0.28 -0.3
3,552,072 + PP_3136 0.49 +0.0
3,552,203 + PP_3136 0.74 +0.8
3,552,253 + PP_3136 0.84 +1.0
3,552,253 + PP_3136 0.84 -0.9
3,552,344 - +1.0
3,552,443 + PP_3137 0.10 -4.1
3,552,443 + PP_3137 0.10 -0.6
3,552,443 + PP_3137 0.10 +0.8
3,552,443 + PP_3137 0.10 +0.2
3,552,443 + PP_3137 0.10 -0.4
3,552,444 - PP_3137 0.10 -0.5
3,552,444 - PP_3137 0.10 +1.6
3,552,504 + PP_3137 0.16 +0.0
3,552,505 - PP_3137 0.16 -2.3
3,552,600 + +0.1
3,552,600 + PP_3137 0.26 -2.0
3,552,600 + PP_3137 0.26 +0.0
3,552,601 - PP_3137 0.26 -2.0
3,552,976 + PP_3137 0.65 +0.1
3,553,013 + PP_3137 0.68 +2.0
3,553,014 - PP_3137 0.69 +0.9
3,553,014 - PP_3137 0.69 +0.2
3,553,086 + PP_3137 0.76 +0.1
3,553,086 + PP_3137 0.76 +0.1
3,553,086 + PP_3137 0.76 +0.4
3,553,087 - PP_3137 0.76 +0.1
3,553,151 + PP_3137 0.83 +1.7
3,553,152 - PP_3137 0.83 -0.9
3,553,313 + +0.8
3,553,314 - +0.3

Or see this region's nucleotide sequence