Strain Fitness in Pseudomonas putida KT2440 around PP_3108

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,510,511	+		PP_5575	0.46	-1.0
3,510,512	-		PP_5575	0.46	+1.2
3,510,872	+		PP_3107	0.13	+1.6
3,511,012	+		PP_3107	0.40	-2.8
3,511,012	+		PP_3107	0.40	+1.9
3,511,013	-		PP_3107	0.40	+0.4
3,511,013	-		PP_3107	0.40	+1.4
3,511,013	-		PP_3107	0.40	+0.0
3,511,130	-		PP_3107	0.62	-3.6
3,511,130	-		PP_3107	0.62	+0.7
3,511,130	-		PP_3107	0.62	+0.5
3,511,130	-		PP_3107	0.62	+2.1
3,511,133	-		PP_3107	0.63	+1.2
3,511,133	-		PP_3107	0.63	+0.7
3,511,133	-		PP_3107	0.63	-0.8
3,511,364	+				+0.8
3,511,364	+				+0.4
3,511,533	-				+0.3
3,511,539	+				+0.4
3,511,539	+				+0.5
3,511,540	-				-4.3
3,511,540	-				+0.7
3,511,540	-				+1.3
3,511,540	-				+0.6
3,511,566	-				+1.8
3,511,786	+		PP_3108	0.11	+1.0
3,511,786	+		PP_3108	0.11	+1.4
3,511,787	-		PP_3108	0.11	+0.7
3,511,981	+		PP_3108	0.16	+0.8
3,511,981	+		PP_3108	0.16	+2.6
3,511,981	+		PP_3108	0.16	-2.9
3,511,982	-		PP_3108	0.16	-0.6
3,511,982	-		PP_3108	0.16	+1.1
3,511,982	-		PP_3108	0.16	+0.3
3,512,150	+		PP_3108	0.20	+0.5
3,512,213	-		PP_3108	0.21	-2.7
3,512,213	-		PP_3108	0.21	+0.8
3,512,213	-		PP_3108	0.21	-0.7
3,512,213	-		PP_3108	0.21	+1.0
3,512,275	+		PP_3108	0.23	+2.1
3,512,275	+		PP_3108	0.23	+0.7
3,512,276	-		PP_3108	0.23	+0.5
3,512,295	+		PP_3108	0.23	+1.5
3,512,296	+		PP_3108	0.23	+0.8
3,512,296	+		PP_3108	0.23	+1.1
3,512,297	-		PP_3108	0.23	+0.1
3,512,323	+		PP_3108	0.24	+1.0
3,512,323	+		PP_3108	0.24	-1.2
3,512,324	-		PP_3108	0.24	+0.0
3,512,356	+		PP_3108	0.25	+0.6
3,512,503	+		PP_3108	0.28	-0.8
3,512,704	+		PP_3108	0.33	-4.4
3,512,846	-		PP_3108	0.36	+1.6
3,512,846	-		PP_3108	0.36	+1.4
3,512,846	-		PP_3108	0.36	-0.7
3,512,846	-		PP_3108	0.36	+2.1
3,513,028	+		PP_3108	0.41	+0.8
3,513,034	+		PP_3108	0.41	+0.9
3,513,276	+		PP_3108	0.47	+1.5
3,513,276	+		PP_3108	0.47	+0.9
3,513,276	+		PP_3108	0.47	-0.1
3,513,277	-		PP_3108	0.47	+1.3
3,513,277	-		PP_3108	0.47	+0.9
3,513,277	-				+0.4
3,513,277	-		PP_3108	0.47	+0.5
3,513,280	+		PP_3108	0.47	-1.2
3,513,281	-		PP_3108	0.47	+1.0
3,513,281	-		PP_3108	0.47	+1.4
3,513,415	+		PP_3108	0.50	+1.2
3,513,415	+		PP_3108	0.50	+1.5
3,513,415	+		PP_3108	0.50	+2.3
3,513,416	-		PP_3108	0.50	+0.1
3,513,416	-		PP_3108	0.50	-0.2
3,513,416	-		PP_3108	0.50	+2.0
3,513,424	+		PP_3108	0.50	+0.6
3,513,425	-		PP_3108	0.50	+2.4
3,513,592	+		PP_3108	0.54	+0.6
3,513,593	-		PP_3108	0.54	-0.1
3,513,605	-		PP_3108	0.55	-0.2
3,513,741	+		PP_3108	0.58	+1.8
3,513,741	+		PP_3108	0.58	-3.9
3,513,742	-		PP_3108	0.58	+0.1
3,513,814	+		PP_3108	0.60	+2.2
3,513,815	-		PP_3108	0.60	-1.8
3,513,901	+		PP_3108	0.62	-0.1
3,513,902	-		PP_3108	0.62	+0.3
3,513,968	-		PP_3108	0.63	+0.4
3,514,030	+		PP_3108	0.65	+1.6
3,514,033	+		PP_3108	0.65	-0.5
3,514,033	+		PP_3108	0.65	-0.7
3,514,118	-		PP_3108	0.67	+0.6
3,514,153	+		PP_3108	0.68	+1.4
3,514,239	+		PP_3108	0.70	+1.1
3,514,239	+		PP_3108	0.70	+0.7
3,514,239	+		PP_3108	0.70	+1.8
3,514,264	+		PP_3108	0.70	-4.6
3,514,265	-		PP_3108	0.71	+0.6
3,514,265	-		PP_3108	0.71	+1.3
3,514,291	+		PP_3108	0.71	+0.9
3,514,292	-		PP_3108	0.71	-0.5
3,514,318	-		PP_3108	0.72	-1.6
3,514,348	+		PP_3108	0.73	-4.7
3,514,354	+		PP_3108	0.73	-3.7
3,514,354	+		PP_3108	0.73	-0.4
3,514,355	-		PP_3108	0.73	+0.4
3,514,420	+		PP_3108	0.74	+1.8
3,514,511	-		PP_3108	0.76	+0.1
3,514,511	-		PP_3108	0.76	+0.4
3,514,516	+		PP_3108	0.77	-0.1
3,514,579	+		PP_3108	0.78	+0.2
3,514,655	-		PP_3108	0.80	+0.1
3,514,676	+		PP_3108	0.80	+1.3
3,514,736	+		PP_3108	0.82	-1.0
3,514,737	-		PP_3108	0.82	-0.7
3,514,778	-		PP_3108	0.83	-0.1
3,514,783	+		PP_3108	0.83	-3.2
3,514,794	+		PP_3108	0.83	+1.8
3,514,795	-		PP_3108	0.83	+1.3
3,514,798	+		PP_3108	0.83	+2.1
3,514,798	+		PP_3108	0.83	+1.2
3,514,798	+		PP_3108	0.83	+0.9
3,514,798	+		PP_3108	0.83	+1.2
3,514,798	+		PP_3108	0.83	+0.7
3,514,798	+		PP_3108	0.83	-0.4
3,514,799	-		PP_3108	0.83	+0.5
3,514,799	-		PP_3108	0.83	+0.6
3,514,799	-		PP_3108	0.83	-1.7
3,514,799	-		PP_3108	0.83	+1.0
3,514,850	-		PP_3108	0.85	-3.5
3,514,850	-		PP_3108	0.85	-0.8
3,514,852	+		PP_3108	0.85	-0.1
3,514,853	-		PP_3108	0.85	-1.1
3,514,853	-		PP_3108	0.85	+1.5
3,515,028	+		PP_3108	0.89	+0.7
3,515,045	-		PP_3108	0.89	-1.0
3,515,066	-		PP_3108	0.90	-3.8
3,515,116	+				+2.2
3,515,170	-				-1.5
3,515,185	+				-2.1
3,515,211	+				+2.7
3,515,212	-				-2.3
3,515,328	-				-0.2
3,515,346	+				-1.5
3,515,376	-				+0.4
3,515,444	+				-0.9
3,515,444	+				-0.7
3,515,445	-				-1.3
3,515,445	-				-0.8
3,515,484	-				-4.0
3,516,007	+				+1.1
3,516,025	-				-3.0
3,516,036	-				-1.4
3,516,043	+				+0.1
3,516,043	+				+2.1
3,516,044	-				+0.5
3,516,047	+				-1.9
3,516,050	+				+0.1
3,516,051	-				-1.1
3,516,051	-				-3.5
3,516,051	-				-2.9
3,516,111	+				-0.4
3,516,112	-				-0.2
3,516,141	-				-1.4
3,516,236	-				+0.4
3,516,276	+				+1.7
3,516,276	+				-2.9
3,516,277	-				+0.9
3,516,485	+				-1.9
3,516,485	+				+2.2
3,516,485	+				-0.6
3,516,485	+				+1.2
3,516,486	-				+1.8
3,516,486	-				+1.2
3,516,486	-				+1.2
3,516,486	-				-2.9