Strain Fitness in Pseudomonas putida KT2440 around PP_3107

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,509,981	-		PP_3106	0.87	+0.1
3,509,981	-		PP_3106	0.87	-4.9
3,509,992	+		PP_3106	0.87	+0.4
3,509,992	+		PP_3106	0.87	+1.0
3,509,993	-		PP_3106	0.87	+2.2
3,509,993	-		PP_3106	0.87	+1.4
3,510,047	+				+0.7
3,510,047	+				-0.5
3,510,047	+				+2.9
3,510,047	+				-1.7
3,510,047	+				-2.6
3,510,048	-				+0.9
3,510,243	+				+1.5
3,510,243	+				+0.5
3,510,244	-				-2.1
3,510,244	-				+1.3
3,510,244	-				-3.1
3,510,244	-				-0.4
3,510,244	-				+0.7
3,510,244	-				+1.6
3,510,244	-				-0.1
3,510,259	-				-2.2
3,510,511	+		PP_5575	0.46	-1.0
3,510,512	-		PP_5575	0.46	+1.2
3,510,872	+		PP_3107	0.13	+1.6
3,511,012	+		PP_3107	0.40	-2.8
3,511,012	+		PP_3107	0.40	+1.9
3,511,013	-		PP_3107	0.40	+0.4
3,511,013	-		PP_3107	0.40	+1.4
3,511,013	-		PP_3107	0.40	+0.0
3,511,130	-		PP_3107	0.62	-3.6
3,511,130	-		PP_3107	0.62	+0.7
3,511,130	-		PP_3107	0.62	+0.5
3,511,130	-		PP_3107	0.62	+2.1
3,511,133	-		PP_3107	0.63	+1.2
3,511,133	-		PP_3107	0.63	+0.7
3,511,133	-		PP_3107	0.63	-0.8
3,511,364	+				+0.8
3,511,364	+				+0.4
3,511,533	-				+0.3
3,511,539	+				+0.4
3,511,539	+				+0.5
3,511,540	-				-4.3
3,511,540	-				+0.7
3,511,540	-				+1.3
3,511,540	-				+0.6
3,511,566	-				+1.8
3,511,786	+		PP_3108	0.11	+1.0
3,511,786	+		PP_3108	0.11	+1.4
3,511,787	-		PP_3108	0.11	+0.7
3,511,981	+		PP_3108	0.16	+0.8
3,511,981	+		PP_3108	0.16	+2.6
3,511,981	+		PP_3108	0.16	-2.9
3,511,982	-		PP_3108	0.16	-0.6
3,511,982	-		PP_3108	0.16	+1.1
3,511,982	-		PP_3108	0.16	+0.3
3,512,150	+		PP_3108	0.20	+0.5
3,512,213	-		PP_3108	0.21	-2.7
3,512,213	-		PP_3108	0.21	+0.8
3,512,213	-		PP_3108	0.21	-0.7
3,512,213	-		PP_3108	0.21	+1.0
3,512,275	+		PP_3108	0.23	+2.1
3,512,275	+		PP_3108	0.23	+0.7
3,512,276	-		PP_3108	0.23	+0.5
3,512,295	+		PP_3108	0.23	+1.5
3,512,296	+		PP_3108	0.23	+0.8
3,512,296	+		PP_3108	0.23	+1.1
3,512,297	-		PP_3108	0.23	+0.1
3,512,323	+		PP_3108	0.24	+1.0
3,512,323	+		PP_3108	0.24	-1.2
3,512,324	-		PP_3108	0.24	+0.0