Strain Fitness in Pseudomonas putida KT2440 around PP_3106

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,507,416	-		PP_3104	0.76	-0.7
3,507,419	+		PP_3104	0.76	-4.1
3,507,420	-		PP_3104	0.76	+1.2
3,507,420	-		PP_3104	0.76	+1.0
3,507,469	+		PP_3104	0.81	+0.2
3,507,470	-		PP_3104	0.81	-0.4
3,507,509	+		PP_3104	0.85	+0.7
3,507,509	+		PP_3104	0.85	+0.6
3,507,509	+		PP_3104	0.85	+0.9
3,507,537	+		PP_3104	0.88	-0.5
3,507,538	-		PP_3104	0.88	+0.0
3,507,775	-		PP_3105	0.18	-2.8
3,507,904	-		PP_3105	0.36	-3.4
3,508,265	-		PP_3105	0.88	-1.6
3,508,358	+				-3.0
3,508,367	+				+0.1
3,508,546	-				+0.7
3,508,665	-		PP_3106	0.16	-0.3
3,508,674	-		PP_3106	0.16	+0.8
3,508,799	+		PP_3106	0.23	-3.1
3,508,812	+		PP_3106	0.24	+2.5
3,508,812	+		PP_3106	0.24	-3.2
3,508,812	+		PP_3106	0.24	+1.5
3,508,813	-		PP_3106	0.24	+0.7
3,508,838	+		PP_3106	0.25	-0.6
3,508,838	+		PP_3106	0.25	+0.9
3,508,839	-		PP_3106	0.25	-0.1
3,508,839	-		PP_3106	0.25	-0.4
3,508,839	-		PP_3106	0.25	+2.4
3,508,839	-		PP_3106	0.25	+0.8
3,508,839	-		PP_3106	0.25	-0.1
3,508,839	-		PP_3106	0.25	+1.6
3,509,038	+		PP_3106	0.36	+0.2
3,509,122	-		PP_3106	0.40	+0.9
3,509,178	-		PP_3106	0.43	+1.5
3,509,195	+		PP_3106	0.44	+0.6
3,509,195	+		PP_3106	0.44	-3.2
3,509,195	+		PP_3106	0.44	-1.0
3,509,196	-		PP_3106	0.44	+1.0
3,509,196	-		PP_3106	0.44	+0.2
3,509,211	-		PP_3106	0.45	-1.0
3,509,232	+		PP_3106	0.46	-3.7
3,509,242	+		PP_3106	0.47	+0.7
3,509,312	+		PP_3106	0.51	+1.4
3,509,336	+		PP_3106	0.52	+1.0
3,509,369	-		PP_3106	0.54	-0.3
3,509,411	+		PP_3106	0.56	+1.2
3,509,411	+		PP_3106	0.56	+1.7
3,509,411	+		PP_3106	0.56	-3.7
3,509,411	+		PP_3106	0.56	+1.1
3,509,412	-		PP_3106	0.56	-2.1
3,509,412	-		PP_3106	0.56	+2.3
3,509,412	-		PP_3106	0.56	-4.3
3,509,412	-		PP_3106	0.56	-1.2
3,509,640	+		PP_3106	0.68	-2.4
3,509,641	-		PP_3106	0.68	+2.5
3,509,765	+		PP_3106	0.75	-1.4
3,509,765	+		PP_3106	0.75	-1.7
3,509,765	+		PP_3106	0.75	+1.4
3,509,766	-		PP_3106	0.75	+1.7
3,509,766	-		PP_3106	0.75	-1.9
3,509,981	-		PP_3106	0.87	+0.1
3,509,981	-		PP_3106	0.87	-4.9
3,509,992	+		PP_3106	0.87	+0.4
3,509,992	+		PP_3106	0.87	+1.0
3,509,993	-		PP_3106	0.87	+2.2
3,509,993	-		PP_3106	0.87	+1.4
3,510,047	+				+0.7
3,510,047	+				-0.5
3,510,047	+				+2.9
3,510,047	+				-1.7
3,510,047	+				-2.6
3,510,048	-				+0.9
3,510,243	+				+1.5
3,510,243	+				+0.5
3,510,244	-				-2.1
3,510,244	-				+1.3
3,510,244	-				-3.1
3,510,244	-				-0.4
3,510,244	-				+0.7
3,510,244	-				+1.6
3,510,244	-				-0.1
3,510,259	-				-2.2
3,510,511	+		PP_5575	0.46	-1.0
3,510,512	-		PP_5575	0.46	+1.2
3,510,872	+		PP_3107	0.13	+1.6
3,511,012	+		PP_3107	0.40	-2.8
3,511,012	+		PP_3107	0.40	+1.9
3,511,013	-		PP_3107	0.40	+0.4
3,511,013	-		PP_3107	0.40	+1.4
3,511,013	-		PP_3107	0.40	+0.0
3,511,130	-		PP_3107	0.62	-3.6
3,511,130	-		PP_3107	0.62	+0.7
3,511,130	-		PP_3107	0.62	+0.5
3,511,130	-		PP_3107	0.62	+2.1
3,511,133	-		PP_3107	0.63	+1.2
3,511,133	-		PP_3107	0.63	+0.7
3,511,133	-		PP_3107	0.63	-0.8