Strain Fitness in Pseudomonas putida KT2440 around PP_3084

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,469,176	+		PP_3083	0.13	+0.5
3,469,176	+		PP_3083	0.13	-4.3
3,469,397	+		PP_3083	0.38	+1.3
3,469,397	+		PP_3083	0.38	-2.1
3,469,398	-		PP_3083	0.38	+1.1
3,469,398	-		PP_3083	0.38	+1.1
3,469,398	-		PP_3083	0.38	+0.3
3,469,526	-		PP_3083	0.53	-3.2
3,469,526	-		PP_3083	0.53	-1.8
3,469,827	-		PP_3083	0.87	-1.2
3,469,888	+				-0.5
3,469,888	+				-0.3
3,469,937	+				-1.9
3,469,937	+				-0.0
3,469,937	+				-1.8
3,469,938	-				-1.5
3,469,938	-				-0.7
3,469,938	-				+1.2
3,469,938	-				+0.5
3,470,034	+				-0.1
3,470,073	+				+1.1
3,470,074	-				-0.6
3,470,074	-				-0.3
3,470,074	-				-0.6
3,470,081	+				+0.2
3,470,082	-				+1.6
3,470,082	-				+0.4
3,470,114	-				-0.5
3,470,127	+				+0.6
3,470,127	+				+0.9
3,470,128	-				+0.5
3,470,128	-				+0.1
3,470,158	-				-0.6
3,470,289	+				+1.2
3,470,290	-				-1.4
3,470,290	-				-0.9
3,470,290	-				+0.6
3,470,370	+		PP_3084	0.12	+0.7
3,470,371	-		PP_3084	0.12	-0.3
3,470,572	-		PP_3084	0.20	-1.3
3,470,584	+		PP_3084	0.21	+0.8
3,470,601	+		PP_3084	0.22	-0.6
3,470,681	+		PP_3084	0.25	+0.6
3,470,682	-		PP_3084	0.25	-0.8
3,470,791	-		PP_3084	0.29	+0.8
3,470,791	-		PP_3084	0.29	-3.2
3,470,817	+		PP_3084	0.30	+0.6
3,470,817	+		PP_3084	0.30	+2.2
3,470,818	-		PP_3084	0.30	+0.9
3,470,998	+		PP_3084	0.38	-0.2
3,470,999	-		PP_3084	0.38	+0.2
3,470,999	-		PP_3084	0.38	-0.4
3,471,045	+		PP_3084	0.40	-0.1
3,471,046	-		PP_3084	0.40	+0.9
3,471,199	-		PP_3084	0.46	-1.1
3,471,240	+		PP_3084	0.47	+1.3
3,471,240	+		PP_3084	0.47	+0.2
3,471,241	-		PP_3084	0.48	-0.6
3,471,252	+		PP_3084	0.48	-2.8
3,471,252	+		PP_3084	0.48	+0.6
3,471,272	-		PP_3084	0.49	+0.8
3,471,295	-		PP_3084	0.50	-0.6
3,471,295	-		PP_3084	0.50	+1.0
3,471,295	-		PP_3084	0.50	+0.0
3,471,295	-		PP_3084	0.50	-1.3
3,471,342	+		PP_3084	0.52	-2.3
3,471,342	+		PP_3084	0.52	+1.5
3,471,342	+		PP_3084	0.52	-1.4
3,471,342	+		PP_3084	0.52	-0.3
3,471,342	+		PP_3084	0.52	+0.5
3,471,342	+		PP_3084	0.52	+0.4
3,471,343	-		PP_3084	0.52	-1.4
3,471,343	-		PP_3084	0.52	-0.5
3,471,343	-		PP_3084	0.52	-1.8
3,471,381	+				-2.5
3,471,381	+		PP_3084	0.53	+1.0
3,471,382	-		PP_3084	0.53	+0.4
3,471,382	-		PP_3084	0.53	+0.5
3,471,382	-		PP_3084	0.53	-2.4
3,471,454	+		PP_3084	0.56	-0.9
3,471,507	+		PP_3084	0.58	-0.8
3,471,508	-		PP_3084	0.58	+0.1
3,471,666	+		PP_3084	0.65	+0.9
3,471,666	+		PP_3084	0.65	-0.4
3,471,667	-		PP_3084	0.65	+0.3
3,471,788	+		PP_3084	0.70	+0.4
3,471,788	+		PP_3084	0.70	-2.1
3,471,854	-		PP_3084	0.72	-1.5
3,471,854	-		PP_3084	0.72	+0.1
3,471,855	+		PP_3084	0.72	-4.2
3,471,855	+		PP_3084	0.72	-0.2
3,471,856	-		PP_3084	0.73	-1.5
3,471,856	-		PP_3084	0.73	+1.3
3,472,005	+		PP_3084	0.79	-0.8
3,472,005	+		PP_3084	0.79	-0.2
3,472,005	+		PP_3084	0.79	-1.5
3,472,005	+		PP_3084	0.79	-3.2
3,472,006	-		PP_3084	0.79	+1.6
3,472,006	-		PP_3084	0.79	-0.7
3,472,006	-		PP_3084	0.79	-1.9
3,472,006	-		PP_3084	0.79	-1.7
3,472,180	+		PP_3084	0.86	-1.1
3,472,181	-		PP_3084	0.86	+1.0
3,472,181	-		PP_3084	0.86	+1.2
3,472,183	-		PP_3084	0.86	-1.1
3,472,198	+		PP_3084	0.86	+1.1
3,472,212	+		PP_3084	0.87	-0.7
3,472,253	-		PP_3084	0.89	-0.9
3,472,253	-		PP_3084	0.89	-1.2
3,472,253	-		PP_3084	0.89	-0.3
3,472,257	+		PP_3084	0.89	-0.4
3,472,258	-		PP_3084	0.89	+1.2
3,472,258	-		PP_3084	0.89	+1.6
3,472,258	-		PP_3084	0.89	-1.1
3,472,283	+		PP_3084	0.90	+2.4
3,472,349	+				-2.3
3,472,349	+				-1.0
3,472,350	-				-1.2
3,472,350	-				-0.8
3,472,380	+				-1.5
3,472,442	+				-0.2
3,472,448	+				-1.3
3,472,449	-				-0.6
3,472,554	+				-3.3
3,472,554	+				+0.7
3,472,554	+				+0.4
3,472,661	-				-0.5
3,472,907	-		PP_3085	0.28	+1.8
3,472,907	-		PP_3085	0.28	-0.5
3,473,029	-		PP_3085	0.40	+0.6
3,473,128	+		PP_3085	0.51	+0.7
3,473,182	-		PP_3085	0.56	-0.4
3,473,203	-		PP_3085	0.58	-0.4
3,473,259	+		PP_3085	0.64	-2.9
3,473,260	-		PP_3085	0.64	+1.2