Strain Fitness in Pseudomonas putida KT2440 around PP_3045

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,428,808	+		PP_3044	0.34	-0.4
3,428,809	-		PP_3044	0.35	-0.4
3,428,839	-		PP_3044	0.37	-1.2
3,429,034	+		PP_3044	0.50	+0.4
3,429,034	+		PP_3044	0.50	+1.7
3,429,268	+		PP_3044	0.65	+0.3
3,429,268	+		PP_3044	0.65	-3.9
3,429,269	-		PP_3044	0.65	+0.6
3,429,280	-		PP_3044	0.66	-0.9
3,429,426	-		PP_3044	0.76	+0.1
3,429,426	-		PP_3044	0.76	-0.3
3,429,427	+		PP_3044	0.76	+0.5
3,429,427	+		PP_3044	0.76	-0.4
3,429,427	+		PP_3044	0.76	-1.0
3,429,428	-		PP_3044	0.76	+0.8
3,429,428	-		PP_3044	0.76	+0.8
3,429,440	+		PP_3044	0.77	-0.8
3,429,441	-		PP_3044	0.77	+0.2
3,429,529	+		PP_3044	0.83	+3.6
3,429,529	+		PP_3044	0.83	-1.5
3,429,565	+		PP_3044	0.85	-1.6
3,429,565	+		PP_3044	0.85	+0.7
3,429,565	+		PP_3044	0.85	+0.0
3,429,566	-		PP_3044	0.85	-2.0
3,429,566	-		PP_3044	0.85	+0.3
3,429,724	+				-1.0
3,429,725	-				-0.7
3,429,725	-				+0.9
3,429,855	+				-1.5
3,429,855	+				-1.1
3,429,855	+				-3.5
3,429,856	-				-3.7
3,429,909	+		PP_3045	0.11	-1.7
3,429,909	+		PP_3045	0.11	+0.1
3,429,909	+		PP_3045	0.11	-0.6
3,429,909	+		PP_3045	0.11	-1.0
3,429,910	-		PP_3045	0.11	-3.4
3,429,910	-		PP_3045	0.11	-3.1
3,429,910	-		PP_3045	0.11	+1.0
3,429,915	+		PP_3045	0.11	-0.1
3,429,916	-		PP_3045	0.11	+1.5
3,429,942	-		PP_3045	0.14	-2.4
3,430,188	+		PP_3045	0.35	+0.5
3,430,189	-		PP_3045	0.35	+0.8
3,430,771	+		PP_3045	0.85	-3.5
3,430,771	+		PP_3045	0.85	+0.1
3,430,772	-		PP_3045	0.85	-0.7
3,430,962	-				-1.8
3,430,966	-				-3.0
3,430,966	-				-2.6
3,430,966	-				-1.0
3,430,966	-				-0.2
3,431,108	+		PP_3046	0.46	+0.4
3,431,486	+		PP_3047	0.13	+1.4
3,431,486	+		PP_3047	0.13	-3.1
3,431,487	-		PP_3047	0.13	-2.6
3,431,487	-		PP_3047	0.13	+0.6
3,431,744	+		PP_3047	0.39	+0.8
3,431,745	-		PP_3047	0.39	+0.3
3,431,819	+		PP_3047	0.46	+0.6
3,431,819	+		PP_3047	0.46	+0.7
3,431,819	+		PP_3047	0.46	-0.8
3,431,819	+		PP_3047	0.46	+1.9
3,431,819	+		PP_3047	0.46	+0.2
3,431,820	-		PP_3047	0.46	-0.9
3,431,820	-		PP_3047	0.46	-0.6
3,431,823	+		PP_3047	0.47	-1.4
3,431,823	+		PP_3047	0.47	-2.9
3,431,823	+		PP_3047	0.47	+0.7
3,431,823	+		PP_3047	0.47	+2.2
3,431,823	+		PP_3047	0.47	-0.1
3,431,823	+		PP_3047	0.47	-0.1
3,431,824	-		PP_3047	0.47	+1.3
3,431,880	-		PP_3047	0.52	+0.4
3,431,942	+		PP_3047	0.59	-4.1
3,431,943	-		PP_3047	0.59	+1.4