Strain Fitness in Pseudomonas putida KT2440 around PP_2789

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,176,943	+		PP_2787	0.86	-0.4
3,177,139	+				+0.7
3,177,139	+				+0.9
3,177,758	+				+0.5
3,177,758	+				-1.8
3,178,026	-		PP_2789	0.17	+0.6
3,178,026	-		PP_2789	0.17	+0.3
3,178,080	+		PP_2789	0.25	-2.9
3,178,081	-		PP_2789	0.26	+1.2
3,178,081	-		PP_2789	0.26	-0.7
3,178,092	+		PP_2789	0.27	+0.9
3,178,124	+		PP_2789	0.33	-1.0
3,178,125	-		PP_2789	0.33	-1.2
3,178,125	-		PP_2789	0.33	-1.0
3,178,153	+		PP_2789	0.37	-0.7
3,178,179	+		PP_2789	0.42	+0.3
3,178,289	-		PP_2789	0.60	-1.8
3,178,341	+		PP_2789	0.68	-1.0
3,178,342	-		PP_2789	0.69	-0.5
3,178,342	-		PP_2789	0.69	+1.7
3,178,428	+		PP_2789	0.83	-1.0
3,178,428	+		PP_2789	0.83	-1.7
3,178,429	-		PP_2789	0.83	-0.9
3,178,429	-		PP_2789	0.83	-0.1
3,178,429	-		PP_2789	0.83	+2.3
3,178,429	-		PP_2789	0.83	-0.7
3,178,429	-		PP_2789	0.83	-2.8
3,178,535	+				+1.0
3,178,536	-				+1.2
3,178,555	-				-1.2
3,178,623	+				-2.8
3,178,624	-				-2.7
3,178,661	+				-0.7
3,178,662	-				-1.0
3,178,823	+				-1.6
3,178,823	+				+0.8
3,178,926	-		PP_2790	0.10	-0.9
3,178,941	+		PP_2790	0.11	-4.0
3,178,942	-		PP_2790	0.11	-1.2
3,178,942	-		PP_2790	0.11	+1.3
3,178,942	-		PP_2790	0.11	+1.6
3,179,202	+		PP_2790	0.25	-3.1
3,179,202	+		PP_2790	0.25	+1.6
3,179,203	-		PP_2790	0.25	+0.6