Strain Fitness in Pseudomonas putida KT2440 around PP_2742

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,124,515	-		PP_2741	0.55	+0.6
3,124,580	-		PP_2741	0.59	-1.6
3,124,606	+		PP_2741	0.61	+0.3
3,124,639	+		PP_2741	0.63	+1.8
3,124,640	-		PP_2741	0.63	+0.4
3,124,755	+		PP_2741	0.70	+0.6
3,124,895	+		PP_2741	0.78	+2.5
3,124,895	+		PP_2741	0.78	-0.1
3,124,895	+		PP_2741	0.78	-3.0
3,124,895	+		PP_2741	0.78	-2.1
3,124,896	-		PP_2741	0.78	+0.3
3,124,896	-		PP_2741	0.78	+0.8
3,124,896	-		PP_2741	0.78	-0.4
3,124,977	-		PP_2741	0.83	+2.7
3,125,145	+				+1.3
3,125,145	+				+0.8
3,125,209	-				-0.8
3,125,284	+				-0.1
3,125,285	-				-0.6
3,125,292	+				+1.3
3,125,292	+				+0.5
3,125,368	+		PP_2742	0.13	-1.0
3,125,498	+		PP_2742	0.49	+0.9
3,125,498	+		PP_2742	0.49	-1.9
3,125,498	+		PP_2742	0.49	-3.5
3,125,567	+		PP_2742	0.69	-2.4
3,125,570	+		PP_2742	0.69	-0.2
3,125,571	-		PP_2742	0.70	+0.8
3,125,605	+		PP_2742	0.79	-0.2
3,125,606	-		PP_2742	0.79	-1.4
3,125,606	-		PP_2742	0.79	-1.6
3,125,713	+				-1.9
3,125,714	-				-0.4
3,125,718	+				-0.2
3,125,718	+				+0.8
3,125,719	-				+0.9
3,125,719	-				-1.4
3,125,722	+				-4.3
3,125,722	+				-0.1
3,125,723	-				+0.1
3,125,830	+		PP_2743	0.26	-0.4
3,125,844	+		PP_2743	0.28	-0.7
3,125,845	-		PP_2743	0.28	+0.2
3,125,845	-		PP_2743	0.28	+0.8
3,125,845	-		PP_2743	0.28	+1.1
3,125,946	+		PP_2743	0.45	-2.6
3,125,947	-		PP_2743	0.46	-0.3
3,125,947	-		PP_2743	0.46	+2.1
3,125,947	-		PP_2743	0.46	+0.3
3,125,947	-		PP_2743	0.46	-0.8
3,125,947	-		PP_2743	0.46	+2.0
3,125,950	+		PP_2743	0.46	-1.9
3,125,950	+		PP_2743	0.46	+1.2
3,125,950	+		PP_2743	0.46	-4.3
3,125,950	+		PP_2743	0.46	-0.3
3,125,950	+		PP_2743	0.46	+0.8
3,125,951	-		PP_2743	0.46	+0.1
3,125,951	-		PP_2743	0.46	-0.5
3,125,951	-		PP_2743	0.46	+1.3
3,125,951	-		PP_2743	0.46	+0.6
3,125,951	-		PP_2743	0.46	-3.0
3,125,951	-		PP_2743	0.46	+2.2
3,125,951	-		PP_2743	0.46	-0.3
3,125,951	-		PP_2743	0.46	+1.5
3,125,965	-		PP_2743	0.49	-0.5
3,125,965	-		PP_2743	0.49	+0.1
3,125,980	+		PP_2743	0.51	-0.9
3,126,037	+		PP_2743	0.61	-3.1
3,126,037	+		PP_2743	0.61	-0.8
3,126,037	+		PP_2743	0.61	-0.5
3,126,037	+		PP_2743	0.61	+1.5
3,126,037	+		PP_2743	0.61	-0.9
3,126,037	+		PP_2743	0.61	+0.4
3,126,038	-		PP_2743	0.61	+1.3
3,126,038	-		PP_2743	0.61	+0.4
3,126,038	-		PP_2743	0.61	-3.5
3,126,038	-		PP_2743	0.61	-0.5
3,126,038	-		PP_2743	0.61	+0.7
3,126,038	-		PP_2743	0.61	-0.6
3,126,038	-		PP_2743	0.61	+1.1
3,126,041	+		PP_2743	0.61	+0.4
3,126,041	+		PP_2743	0.61	-0.6
3,126,041	+		PP_2743	0.61	+0.4
3,126,041	+		PP_2743	0.61	+1.0
3,126,041	+		PP_2743	0.61	-2.9
3,126,041	+		PP_2743	0.61	+2.1
3,126,041	+		PP_2743	0.61	+0.1
3,126,042	-		PP_2743	0.62	-0.1
3,126,042	-		PP_2743	0.62	-1.2
3,126,042	-		PP_2743	0.62	+0.1
3,126,042	-		PP_2743	0.62	+0.6
3,126,042	-		PP_2743	0.62	-0.6
3,126,042	-		PP_2743	0.62	+1.2
3,126,042	-		PP_2743	0.62	+0.8
3,126,042	-		PP_2743	0.62	+0.1
3,126,042	-		PP_2743	0.62	-1.3
3,126,042	-		PP_2743	0.62	-2.5
3,126,177	+		PP_2743	0.84	+0.3
3,126,177	+		PP_2743	0.84	+0.7
3,126,177	+		PP_2743	0.84	+0.1
3,126,178	-		PP_2743	0.85	-3.0
3,126,178	-		PP_2743	0.85	-0.8
3,126,181	+		PP_2743	0.85	-0.4
3,126,182	-		PP_2743	0.85	-0.1
3,126,263	+				+0.6
3,126,310	+				+0.9
3,126,310	+				-1.2
3,126,311	-				-2.5
3,126,333	+				+0.8
3,126,341	+				-1.5
3,126,342	-				-1.7
3,126,343	+				+1.4
3,126,343	+				-0.1
3,126,344	-				+0.6
3,126,344	-				+0.9
3,126,344	-				-2.1
3,126,344	-				+0.6