Strain Fitness in Pseudomonas putida KT2440 around PP_2690

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,079,099	+		PP_2688	0.88	+0.4
3,079,099	+		PP_2688	0.88	+0.9
3,079,265	+				-0.0
3,079,266	-				-0.5
3,079,266	-				-0.5
3,079,341	+				+1.1
3,079,341	+				-0.0
3,079,417	+				-0.3
3,079,593	-				-0.6
3,079,593	-				+0.3
3,079,673	-				-0.7
3,079,673	-				-1.6
3,079,712	+				-0.7
3,079,712	+				+2.0
3,079,763	-		PP_2689	0.17	-0.6
3,079,796	+		PP_2689	0.26	-0.3
3,079,816	+		PP_2689	0.31	+1.5
3,079,817	-		PP_2689	0.32	+0.7
3,079,817	-		PP_2689	0.32	+0.0
3,079,829	+		PP_2689	0.35	-0.1
3,079,830	-		PP_2689	0.35	+2.1
3,079,847	+		PP_2689	0.40	+0.1
3,079,968	+		PP_2689	0.72	-0.6
3,079,991	+		PP_2689	0.78	-0.6
3,079,992	-		PP_2689	0.79	-0.8
3,079,992	-		PP_2689	0.79	+0.9
3,079,999	-		PP_2689	0.81	+1.2
3,080,197	-		PP_2690	0.14	+1.2
3,080,211	+		PP_2690	0.16	+0.8
3,080,245	+		PP_2690	0.21	+1.8
3,080,245	+		PP_2690	0.21	-4.8
3,080,246	-		PP_2690	0.21	+0.8
3,080,246	-		PP_2690	0.21	-0.1
3,080,246	-		PP_2690	0.21	+1.6
3,080,287	+		PP_2690	0.27	+0.2
3,080,287	+		PP_2690	0.27	+1.5
3,080,287	+		PP_2690	0.27	+2.0
3,080,287	+		PP_2690	0.27	+1.5
3,080,288	-		PP_2690	0.27	+0.1
3,080,288	-		PP_2690	0.27	+1.5
3,080,441	+		PP_2690	0.49	+0.3
3,080,442	-		PP_2690	0.49	+0.3
3,080,476	+		PP_2690	0.54	+0.2
3,080,771	-				+1.3
3,080,892	-				+2.1
3,081,010	+		PP_2691	0.12	+0.2
3,081,010	+		PP_2691	0.12	+0.3
3,081,011	-		PP_2691	0.13	+0.7
3,081,011	-		PP_2691	0.13	-0.3
3,081,042	+		PP_2691	0.14	+0.9
3,081,292	+		PP_2691	0.29	-0.8
3,081,293	-		PP_2691	0.29	+0.3
3,081,692	+		PP_2691	0.52	+1.0
3,081,775	+		PP_2691	0.57	-0.1