Strain Fitness in Pseudomonas putida KT2440 around PP_2678

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,064,954	+		PP_2676	0.89	-0.1
3,064,954	+		PP_2676	0.89	-1.1
3,064,954	+		PP_2676	0.89	-1.5
3,064,954	+		PP_2676	0.89	-3.3
3,064,955	-		PP_2676	0.89	-2.4
3,064,955	-		PP_2676	0.89	-2.5
3,064,955	-		PP_2676	0.89	+2.2
3,065,012	-				-1.0
3,065,012	-				-0.3
3,065,012	-				-1.0
3,065,012	-				-1.0
3,065,032	+				+0.9
3,065,050	+				-2.3
3,065,050	+				+1.7
3,065,051	-				-1.1
3,065,051	-				-1.0
3,065,056	+				-0.0
3,065,056	+				+1.5
3,065,176	-		PP_2677	0.15	+1.0
3,065,315	+		PP_2677	0.33	+0.2
3,065,501	+		PP_2677	0.57	+1.3
3,065,675	-		PP_2677	0.80	+1.3
3,066,132	+				-2.4
3,066,269	+		PP_2678	0.44	-2.3
3,066,270	-		PP_2678	0.44	+1.8
3,066,270	-		PP_2678	0.44	+1.7
3,066,270	-		PP_2678	0.44	+0.9
3,066,270	-		PP_2678	0.44	-0.7
3,066,270	-		PP_2678	0.44	-2.4
3,066,389	-		PP_2678	0.56	-4.2
3,066,455	+		PP_2678	0.64	-0.9
3,066,456	-		PP_2678	0.64	-0.4
3,066,456	-		PP_2678	0.64	-3.6
3,066,549	+		PP_2678	0.74	+0.7
3,066,605	+		PP_2678	0.80	+0.6
3,066,720	-				+0.3
3,066,955	-				-0.6
3,067,128	-				+0.5
3,067,156	+		PP_2679	0.11	+0.8
3,067,253	+		PP_2679	0.16	+0.3
3,067,253	+				+0.9
3,067,268	+		PP_2679	0.17	+0.8
3,067,268	+		PP_2679	0.17	-2.0
3,067,320	-		PP_2679	0.20	-1.8
3,067,362	+		PP_2679	0.22	-1.1
3,067,363	-		PP_2679	0.22	+0.2
3,067,493	+		PP_2679	0.30	+0.9
3,067,646	+		PP_2679	0.38	-1.4
3,067,647	-		PP_2679	0.38	-2.1
3,067,652	+		PP_2679	0.39	-0.1
3,067,652	+		PP_2679	0.39	-1.9
3,067,652	+		PP_2679	0.39	-0.4
3,067,652	+		PP_2679	0.39	-4.3
3,067,652	+		PP_2679	0.39	+1.9
3,067,653	-		PP_2679	0.39	-0.7
3,067,761	-		PP_2679	0.45	-2.4
3,067,763	+		PP_2679	0.45	+0.2
3,067,763	+		PP_2679	0.45	-0.1
3,067,764	-		PP_2679	0.45	+1.0