Strain Fitness in Pseudomonas putida KT2440 around PP_2662

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,048,183	+		PP_2661	0.40	+0.5
3,048,184	-		PP_2661	0.40	-1.1
3,048,184	-		PP_2661	0.40	-0.8
3,048,353	-		PP_2661	0.68	+1.1
3,048,353	-		PP_2661	0.68	+0.9
3,048,353	-		PP_2661	0.68	+1.1
3,048,353	-		PP_2661	0.68	-1.4
3,048,567	+				+0.5
3,048,567	+				+0.9
3,048,568	-				+1.8
3,048,568	-				-0.8
3,048,572	+				-0.9
3,048,572	+				+1.5
3,048,572	+				-0.3
3,048,572	+				-0.2
3,048,572	+				+0.2
3,048,647	+				-4.4
3,048,647	+				+2.1
3,048,648	-				+2.5
3,048,648	-				-1.4
3,048,648	-				+0.2
3,048,681	+				+1.5
3,048,681	+				+2.3
3,048,681	+				+2.6
3,048,682	-				+1.9
3,048,855	+				+0.5
3,048,855	+				+0.8
3,048,856	-				+1.4
3,048,856	-				+1.4
3,048,947	-				+0.5
3,048,983	-		PP_2662	0.12	+1.3
3,048,983	-		PP_2662	0.12	-4.9
3,048,984	+		PP_2662	0.12	+2.4
3,048,997	+		PP_2662	0.13	+1.5
3,048,997	+		PP_2662	0.13	-0.4
3,048,998	-		PP_2662	0.13	+1.8
3,049,078	+		PP_2662	0.20	+0.8
3,049,078	+		PP_2662	0.20	+1.1
3,049,078	+		PP_2662	0.20	-0.5
3,049,079	-		PP_2662	0.20	+1.1
3,049,079	-		PP_2662	0.20	+1.8
3,049,079	-		PP_2662	0.20	+3.4
3,049,079	-		PP_2662	0.20	-0.1
3,049,079	-		PP_2662	0.20	-2.1
3,049,205	-		PP_2662	0.31	-2.4
3,049,396	-		PP_2662	0.47	+2.4
3,049,411	+		PP_2662	0.48	+1.8
3,049,412	-		PP_2662	0.48	+1.6
3,049,412	-		PP_2662	0.48	-1.1
3,049,436	+		PP_2662	0.50	+0.9
3,049,437	-		PP_2662	0.50	+1.1
3,049,537	+		PP_2662	0.59	+2.1
3,049,567	+		PP_2662	0.61	+1.5
3,049,567	+		PP_2662	0.61	+2.3
3,049,567	+		PP_2662	0.61	+1.5
3,049,567	+		PP_2662	0.61	-3.8
3,049,589	-		PP_2662	0.63	+2.4
3,049,605	+		PP_2662	0.64	+0.8
3,049,606	-		PP_2662	0.64	+0.6
3,049,606	-		PP_2662	0.64	+2.5
3,049,606	-		PP_2662	0.64	+2.0
3,049,792	+		PP_2662	0.80	+1.2
3,049,792	+		PP_2662	0.80	+1.6
3,049,792	+		PP_2662	0.80	+1.2
3,049,793	-		PP_2662	0.80	+1.3
3,049,793	-		PP_2662	0.80	+1.7
3,049,825	+		PP_2662	0.83	+2.1
3,049,826	-		PP_2662	0.83	+0.9
3,049,826	-		PP_2662	0.83	+2.6
3,049,939	+				-3.3
3,049,940	-				-2.1
3,049,995	+				-0.3
3,049,996	-				+2.0
3,050,104	-				+1.5
3,050,104	-				+0.4
3,050,184	-				+1.0
3,050,543	+		PP_2663	0.32	+0.7
3,050,706	+		PP_2663	0.46	-1.9
3,050,706	+		PP_2663	0.46	+0.8
3,050,707	-		PP_2663	0.46	+0.0
3,050,707	-		PP_2663	0.46	-1.2
3,050,707	-		PP_2663	0.46	-3.3
3,050,710	-		PP_2663	0.46	+0.5
3,050,710	-		PP_2663	0.46	+0.5
3,050,886	+		PP_2663	0.62	+1.2
3,050,973	+		PP_2663	0.69	+0.2
3,050,973	+		PP_2663	0.69	+3.3
3,050,974	-		PP_2663	0.69	+0.7
3,050,974	-		PP_2663	0.69	-1.7
3,050,976	+		PP_2663	0.69	+3.2
3,050,976	+		PP_2663	0.69	+0.8
3,050,976	+		PP_2663	0.69	+1.0
3,050,977	-		PP_2663	0.69	-0.5
3,050,977	-		PP_2663	0.69	+1.4
3,051,024	+		PP_2663	0.73	+0.3