Strain Fitness in Pseudomonas putida KT2440 around PP_2657

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
3,043,534	+		PP_2656	0.18	+0.8
3,043,534	+		PP_2656	0.18	-0.2
3,043,535	-		PP_2656	0.18	+1.2
3,043,691	-		PP_2656	0.33	-1.2
3,043,710	+		PP_2656	0.35	-0.4
3,043,710	+		PP_2656	0.35	+2.4
3,043,738	+		PP_2656	0.38	+1.7
3,043,746	+		PP_2656	0.39	+1.8
3,044,027	-		PP_2656	0.65	-0.1
3,044,095	+		PP_2656	0.72	+1.8
3,044,096	-		PP_2656	0.72	+1.2
3,044,096	-		PP_2656	0.72	-2.5
3,044,099	+		PP_2656	0.72	+0.8
3,044,212	+		PP_2656	0.83	-0.4
3,044,212	+		PP_2656	0.83	+0.5
3,044,212	+		PP_2656	0.83	+1.5
3,044,212	+		PP_2656	0.83	+1.5
3,044,213	-		PP_2656	0.83	+0.8
3,044,284	+				-3.1
3,044,284	+				+0.9
3,044,285	-				-0.6
3,044,326	+				+0.1
3,044,365	-				+0.9
3,044,365	-				+0.4
3,044,386	+				+1.5
3,044,386	+				+1.8
3,044,387	-				-2.5
3,044,391	-				-0.9
3,044,693	+		PP_2657	0.24	+0.7
3,044,693	+				+2.5
3,044,694	-		PP_2657	0.24	+0.7
3,044,694	-		PP_2657	0.24	-3.5
3,044,694	-		PP_2657	0.24	+1.4
3,044,694	-		PP_2657	0.24	-0.0
3,044,698	+		PP_2657	0.25	+0.8
3,044,699	-		PP_2657	0.25	-0.1
3,044,719	+		PP_2657	0.27	+3.8
3,044,719	+		PP_2657	0.27	-0.4
3,044,727	-		PP_2657	0.28	+0.9
3,044,888	+		PP_2657	0.44	+1.7
3,044,888	+		PP_2657	0.44	+0.2
3,044,888	+		PP_2657	0.44	+1.5
3,044,888	+		PP_2657	0.44	+0.1
3,044,888	+		PP_2657	0.44	+2.4
3,044,888	+		PP_2657	0.44	-3.7
3,044,889	-		PP_2657	0.44	+0.1
3,044,889	-		PP_2657	0.44	-0.5
3,044,889	-		PP_2657	0.44	-0.7
3,044,889	-		PP_2657	0.44	+0.3
3,045,063	+		PP_2657	0.62	+0.7
3,045,064	-		PP_2657	0.62	+1.1
3,045,064	-		PP_2657	0.62	-0.2
3,045,064	-		PP_2657	0.62	+1.4
3,045,068	-		PP_2657	0.63	-0.3
3,045,100	+		PP_2657	0.66	+1.2
3,045,100	+		PP_2657	0.66	+0.7
3,045,103	+		PP_2657	0.66	+1.3
3,045,104	-		PP_2657	0.67	+0.9
3,045,336	-				-2.8
3,045,348	+				+1.1
3,045,402	-				+3.6
3,045,402	-				+1.5
3,045,416	-				-0.8
3,045,503	+				-0.5
3,045,565	+		PP_2658	0.16	-0.0
3,045,566	-		PP_2658	0.16	+0.5
3,045,663	+		PP_2658	0.27	-1.4
3,046,126	+		PP_2658	0.79	+0.1
3,046,126	+		PP_2658	0.79	-4.1
3,046,193	-		PP_2658	0.86	+0.0
3,046,260	-				+1.1
3,046,260	-				+0.0
3,046,260	-				+0.4
3,046,312	+				-0.8
3,046,312	+				-2.6
3,046,313	-				+2.3
3,046,342	+				+0.3
3,046,342	+				+1.8
3,046,419	+		PP_2659	0.12	+0.9
3,046,420	-		PP_2659	0.13	+0.9
3,046,424	+		PP_2659	0.13	+1.8