Strain Fitness in Pseudomonas putida KT2440 around PP_2587

Experiment: 3-methyl-1-butanol 0.25 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.25 vol% (C)
2,954,103	+		PP_2586	0.71	+0.6
2,954,103	+		PP_2586	0.71	+1.9
2,954,103	+		PP_2586	0.71	+2.3
2,954,103	+		PP_2586	0.71	-1.6
2,954,103	+		PP_2586	0.71	+0.3
2,954,103	+		PP_2586	0.71	-1.7
2,954,103	+		PP_2586	0.71	+1.1
2,954,103	+		PP_2586	0.71	-2.1
2,954,104	-		PP_2586	0.72	-0.1
2,954,104	-		PP_2586	0.72	-2.7
2,954,104	-		PP_2586	0.72	-3.0
2,954,104	-		PP_2586	0.72	+0.8
2,954,104	-		PP_2586	0.72	-0.1
2,954,121	+		PP_2586	0.73	+0.2
2,954,122	-		PP_2586	0.73	-0.1
2,954,122	-		PP_2586	0.73	+1.5
2,954,122	-		PP_2586	0.73	-2.3
2,954,145	+		PP_2586	0.74	+0.1
2,954,145	+		PP_2586	0.74	+0.3
2,954,146	-		PP_2586	0.75	+0.2
2,954,214	+		PP_2586	0.79	-0.2
2,954,215	-		PP_2586	0.80	-4.0
2,954,354	+		PP_2586	0.90	-0.4
2,954,355	-		PP_2586	0.90	-4.0
2,954,373	+				+1.0
2,954,374	-				-0.1
2,954,374	-				-0.9
2,954,374	-				-0.8
2,954,470	+				-0.4
2,954,470	+				-0.1
2,954,480	-				-2.1
2,954,480	-				+0.8
2,954,491	+				-0.4
2,954,491	+				-2.0
2,954,491	+				-0.0
2,954,492	-				+1.0
2,954,492	-				-0.4
2,954,502	-				-0.1
2,954,502	-				-0.7
2,954,719	-				-0.5
2,954,719	-				-0.1
2,954,774	+				+0.8
2,954,775	-				-0.1
2,954,775	-				+0.1
2,954,913	+		PP_2587	0.16	-0.3
2,954,914	-		PP_2587	0.16	-0.1
2,955,015	+		PP_2587	0.28	-1.2
2,955,034	-		PP_2587	0.30	+0.6
2,955,035	-		PP_2587	0.30	-2.3
2,955,070	-		PP_2587	0.35	-0.8
2,955,114	+		PP_2587	0.40	-1.5
2,955,115	-		PP_2587	0.40	+0.5
2,955,117	+		PP_2587	0.40	+1.0
2,955,118	-		PP_2587	0.40	-1.3
2,955,118	-		PP_2587	0.40	-0.3
2,955,118	-		PP_2587	0.40	-4.3
2,955,162	+				+0.9
2,955,162	+		PP_2587	0.46	-3.2
2,955,163	-		PP_2587	0.46	+0.9
2,955,269	-		PP_2587	0.58	-0.5
2,955,344	+		PP_2587	0.67	-1.9
2,955,345	-		PP_2587	0.67	+0.3
2,955,345	-		PP_2587	0.67	-2.1
2,955,345	-		PP_2587	0.67	-1.0
2,955,600	+				+0.5
2,955,601	-				-0.8
2,955,870	+		PP_2588	0.15	-0.1
2,955,870	+		PP_2588	0.15	-0.8
2,955,924	+		PP_2588	0.19	+0.6
2,955,925	-		PP_2588	0.19	+0.7
2,955,925	-		PP_2588	0.19	+1.7
2,955,925	-		PP_2588	0.19	-0.5
2,955,927	+		PP_2588	0.19	-1.7
2,955,927	+		PP_2588	0.19	+0.5
2,955,927	+		PP_2588	0.19	-0.1
2,955,928	-				+1.9
2,955,928	-		PP_2588	0.19	-2.9
2,956,006	-		PP_2588	0.25	+1.2
2,956,020	+		PP_2588	0.26	-1.2
2,956,021	-		PP_2588	0.26	+0.3
2,956,052	-		PP_2588	0.28	+1.4
2,956,052	-		PP_2588	0.28	+0.2
2,956,052	-		PP_2588	0.28	-0.6
2,956,392	+		PP_2588	0.53	+1.5
2,956,392	+		PP_2588	0.53	-1.0
2,956,412	+		PP_2588	0.54	+0.1
2,956,497	+		PP_2588	0.60	-1.2
2,956,497	+		PP_2588	0.60	+1.3
2,956,497	+		PP_2588	0.60	+0.3
2,956,497	+		PP_2588	0.60	-1.1
2,956,551	+		PP_2588	0.64	+0.7